Job Description P12995 Confidence 99.87% Date Thu Jan 5 11:33:14 GMT 2012 Rank 139 Aligned Residues 324 % Identity 14% Template c3n0lA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni Resolution 1.80 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.								.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.
Predicted Secondary structure																																.													.	.	.	.	.	.	.																									.
Query SS confidence																																.													.	.	.	.	.	.	.																									.
Query Sequence		R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	.	D	A	M	S	H	V	M	F	G	G	I	T	.	.	.	.	.	.	.	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	F	L	.	A	D	S	G	S
Query Conservation																																.													.	.	.	.	.	.	.																									.
Alig confidence											.	.					.	.	.													.													.	.	.	.	.	.	.																.	.								.
Template Conservation											.	.					.	.	.																																																.	.
Template Sequence		C	E	G	L	E	X	I	A	S	.	.	E	N	F	T	.	.	.	L	P	E	V	X	E	V	X	G	S	I	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	F	V	D	E	I	E	T	L	A	I	E	R	C	K	K	L	F	.	.	N	C	K	F	A	N	V	Q	P	N	S	G	S
Template Known Secondary structure				S					T	T	.	.					.	.	.									T	S	G	G	G	G							T	T			S	S	S																					.	.	T		S							S	S
Template Predicted Secondary structure											.	.					.	.	.																																																.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30			.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G
Query Conservation
Alig confidence										.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	N	Q	G	V	Y	A	.	.	.	.	.	.	.	A	L	I	N	P	G	D	K	I	L	G	X	D	L	K	X	Y	E	S	C	F	Y	G	V	E	L	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	D	Y	E	K
Template Known Secondary structure										.	.	.	.	.	.	.			S		T	T											S									T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure										.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.								.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130																																.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G
Query Conservation
Alig confidence													.	.	.							.	.									.	.	.	.																						.																.
Template Conservation													.	.	.							.	.									.	.	.	.																						.																.
Template Sequence		V	R	E	I	A	K	K	E	K	P	K	.	.	.	L	I	V	C	G	A	.	.	S	A	Y	A	R	V	I	D	.	.	.	.	F	A	K	F	R	E	I	A	D	E	I	G	A	Y	L	F	A	D	I	A	H	.	I	A	G	L	V	V	A	G	E	H	P	S	P	F	P	.	Y	A	H	V	V	S	S	T
Template Known Secondary structure												S	.	.	.							.	.	S	S			S				.	.	.	.												T								T	T	.	T						T	T	S	S				T	T	.	T		S
Template Predicted Secondary structure													.	.	.							.	.									.	.	.	.																						.																.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.			170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A
Query Conservation
Alig confidence																																																																															.
Template Conservation																																																																															.
Template Sequence		T	H	K	T	L	R	G	P	R	G	G	I	I	X	T	N	D	E	E	L	A	K	K	I	N	S	A	I	F	P	G	I	Q	G	G	P	L	X	H	V	I	A	A	K	A	V	G	F	K	F	N	L	S	D	E	W	K	V	Y	A	K	Q	V	R	T	N	A	Q	V	L	A	N	V	L	X	D	R	.	K	F
Template Known Secondary structure		S	S	T	T	T		S		S							S													T	T	T	T		S	S																	T	S																								T	.	T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.												.	.	.	.	.	.	400	.	.					.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query Sequence		E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	.	.	.	.	.	.	.	.	.	.	.	G	K	L	I	Y	L	M	P	P	.	.	.	.	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		K	L	V	S	D	G	T	D	N	H	L	V	L	X	S	F	L	D	R	E	F	S	G	K	D	A	D	L	A	L	G	N	A	G	I	T	A	N	K	N	T	V	P	G	E	I	R	S	P	F	I	T	S	G	L	R	L	G	T	P	A	L	T	A	R	G	F	K	E	K	E	X	E	I	V	S	N	Y	I	A
Template Known Secondary structure				G	G	G	S		S	S	S							T	T	S	S	S												T	T									T	T			S		T	T	T		S												T	T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		419	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	L	D	D
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions