Job Description P12995 Confidence 99.85% Date Thu Jan 5 11:33:14 GMT 2012 Rank 155 Aligned Residues 351 % Identity 11% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																		.	.																																							.	.	.	.	.	.	.	.
Query SS confidence																		.	.																																							.	.	.	.	.	.	.	.
Query Sequence		V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	.	.	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	.	.	.	.	.	.	.	.	P	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A
Query Conservation																		.	.																																							.	.	.	.	.	.	.	.
Alig confidence																		.	.																																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	L	G	V	G	A	Y	R	D	E	S	G	K	P	W	I	L	P	A	V	K	E	A	E	A	I	I	S	S	D	L	S	K	Y	N	K	E	Y	P	P	V	A	G	F	P	L	F	L	E	A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	G	R	I	A	S	C	Q	S	L	S	G	T	G	S
Template Known Secondary structure					S	S						T	T	S																	S		T	T	T	S			S				T	T																T	T						T	T								S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A
Query Conservation
Alig confidence													.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation													.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		L	H	I	G	F	E	F	L	H	L	W	.	.	.	.	.	M	P	K	A	E	F	Y	M	P	S	T	T	W	P	N	H	Y	G	I	Y	D	K	V	F	N	K	L	.	.	.	.	.	.	.	.	.	.	.	.	K	V	P	Y	K	E	Y	T	Y	L	R	K	D	G	E	L	E	I	.	D	F	S	N	T	K
Template Known Secondary structure													.	.	.	.	.		T	T							S	S			T												T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	S								B		T	T	S		S	S	B	.
Template Predicted Secondary structure													.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.						.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.													.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.								.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.
Query Sequence		R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	.	.	.	.	.	.	.	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D
Query Conservation																																																											.	.	.	.	.	.	.
Alig confidence																									.	.																																	.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		K	D	I	Q	S	A	P	E	K	S	I	F	L	F	H	A	C	A	H	N	P	S	G	.	.	I	D	F	T	E	A	Q	W	K	E	L	L	P	I	M	K	E	K	K	H	I	A	F	F	D	S	A	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A	V	R	M	F	V	D	A	G	V	E	V	L	V
Template Known Secondary structure							S		T	T							S	S	S		T	T	T		.	.																			T								S		T	T	T	S	S	S						T										T
Template Predicted Secondary structure																									.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.											.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.									.	.	.	.	330
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	.	.	.	.	.	.	.	.	.	.	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	.	.	.	.	.	.	.	.	I	L	E	S	G
Query Conservation																																									.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	S	F	S	K	N	F	G	L	Y	G	E	R	I	G	C	L	H	V	V	H	A	G	V	E	G	S	V	E	K	N	K	A	L	S	A	A	M	V	S	G	M	T	L	Q	I	R	K	T	W	S	M	S	A	I	H	G	A	Y	I	V	Q	V	I	V	H	D	K	R	L	L	Q	M	F	Y	D	N	V	K
Template Known Secondary structure						T	T	T	S			G	G	G											S		S	S	S																					T	T	T	S	S														T	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.							.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.
Query Sequence		D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	.	.	.	.	.	.	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	K	L	I	Y	L	M	P	P	Y	I
Query Conservation																														.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.																.	.	.	.																								.	.	.
Template Conservation																																																			.	.	.	.																								.	.	.
Template Sequence		E	M	S	A	R	I	H	R	M	R	S	L	L	H	A	S	L	A	K	R	K	T	P	G	P	G	S	K	G	T	W	D	H	I	L	T	A	I	G	M	F	T	F	T	G	L	T	P	E	.	.	.	.	H	V	D	Y	L	K	E	K	W	S	I	Y	L	V	K	A	G	G	R	M	S	M	C	.	.	.	G
Template Known Secondary structure																					T	T				S	T	T	T	T			T							S	S										.	.	.	.														B	T	G	G	G				G	G	.	.	.	G
Template Predicted Secondary structure																																																			.	.	.	.																								.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.				.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	E	S	N	C	D	Y	V	A	E	A	I	H	D	A	V	T	K
Template Known Secondary structure				T	T	T
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions