Job Description P12995 Confidence 99.96% Date Thu Jan 5 11:33:14 GMT 2012 Rank 55 Aligned Residues 346 % Identity 14% Template c3mafB_ PDB info PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form) Resolution 2.97 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.																						.	.	.	.
Query SS confidence																																												.	.	.	.	.																						.	.	.	.
Query Sequence		R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	H	.	.	.	.	.	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	.	.	.	.	F	L	A	D	S	G	S	V
Query Conservation																																												.	.	.	.	.																						.	.	.	.
Alig confidence																.	.																											.	.	.	.	.																						.	.	.	.
Template Conservation																.	.
Template Sequence		E	I	L	A	E	I	A	A	M	G	A	G	A	V	.	.	Y	D	E	H	H	I	A	F	L	N	E	V	Y	A	L	Q	S	Q	S	N	P	L	H	P	D	L	W	P	S	T	A	K	F	E	A	E	V	V	A	M	T	A	H	M	L	G	G	D	A	A	G	G	T	V	C	G	T	V	T	S	G	G	T	E
Template Known Secondary structure																.	.																	T	T			T	T		T	T	T																			T	T	T	T	T	T	T	S								S	S
Template Predicted Secondary structure																.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Sequence		S	L	L	L	A	M	K	T	Y	R	D	W	A	R	A	T	K	G	I	T	A	P	E	A	V	V	P	V	S	A	H	A	A	F	D	K	A	A	Q	Y	F	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	V	R	T	P	L	D	A	D	Y	R	A	.	.	.	.	.	.	D	V	A	A	M
Template Known Secondary structure																					S	S							T	T	S		T										T		.	.	.	.	.	.	.	.	.	.	.	.	.							B		T	T	S	S	B	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.														.	.	.	.	.	.	220	.	.	.	.	.	.							.	.	.	230	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.									.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.
Query Sequence		A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	.	.	.	.	.	.	.	.	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A
Query Conservation																																																											.	.	.	.	.	.	.	.
Alig confidence						.	.	.																		.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation						.	.	.																		.	.	.	.	.
Template Sequence		R	E	A	I	.	.	.	T	P	N	T	V	V	V	A	G	S	A	P	G	Y	P	H	G	.	.	.	.	.	V	V	D	P	I	P	E	I	A	A	L	A	A	E	H	G	I	G	C	H	V	D	A	C	L	G	G	F	I	L	P	W	A	E	R	L	G	Y	P	V	P	P	F	D	F	R	L	E	G	V	T
Template Known Secondary structure						.	.	.		T	T								T	T		T	T	T		.	.	.	.	.																T								T	T	T	T	T	T						T	T	T							S	T	T	S	T	T
Template Predicted Secondary structure						.	.	.																		.	.	.	.	.
Template SS confidence
		232	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.										.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.
Query Sequence		P	D	I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	.	.	.	.	.	.	.	.	.	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A
Query Conservation																																					.	.	.	.	.	.	.	.	.
Alig confidence															.																						.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		S	V	S	A	D	T	H	K	Y	G	Y	G	A	.	K	G	T	S	V	I	L	Y	R	R	P	D	L	L	H	Y	Q	Y	F	I	A	A	D	W	P	G	G	L	Y	F	S	P	T	F	A	G	S	R	P	G	A	L	S	A	T	A	W	A	A	M	L	S	L	G	E	E	G	Y	L	D	A	T	R	R	I	L
Template Known Secondary structure							T	T	T	T	T				.	S	S							S	S												S	S		T	T						S	S	S		S	S
Template Predicted Secondary structure															.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.			.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																																											.	.							.
Query SS confidence																																																											.	.							.
Query Sequence		D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	.	K	L	I	Y	L	M	.	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T
Query Conservation																																																											.	.							.
Alig confidence																										.	.	.								.																							.	.							.
Template Conservation																										.	.	.								.
Template Sequence		Q	A	A	D	R	L	K	A	G	V	R	A	I	P	S	L	K	I	L	G	D	P	L	W	.	.	.	V	I	A	V	A	S	D	.	E	L	N	I	Y	Q	V	M	E	E	M	A	G	R	G	W	R	L	N	G	L	H	R	P	P	A	F	H	V	A	L	T	L	R	H	T	E	P	G	V	V	D	R	F	L
Template Known Secondary structure													T	S	T	T				S	S			S	S	.	.	.							S	.	S	S												T	T							T	T	T	T								G	G	G	S	S	T	T
Template Predicted Secondary structure																										.	.	.								.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.				.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		415	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	L	Q	D	A	V	A	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		459	460	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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