Job Description P12995 Confidence 99.62% Date Thu Jan 5 11:33:14 GMT 2012 Rank 231 Aligned Residues 327 % Identity 9% Template c3m5uA_ PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni Resolution 2.15 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.									.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.																					.
Query SS confidence																																												.	.	.	.	.	.	.	.																					.
Query Sequence		R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	.	.	.	.	.	.	.	.	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	.	C	V	F	L	A	D	S	G	S
Query Conservation																																												.	.	.	.	.	.	.	.																					.
Alig confidence											.	.					.	.	.																									.	.	.	.	.	.	.	.																					.
Template Conservation											.	.					.	.	.
Template Sequence		X	R	K	I	N	F	S	A	G	.	.	P	S	T	L	.	.	.	P	L	E	I	L	E	Q	A	Q	K	E	L	C	D	Y	Q	G	R	G	Y	S	I	X	E	I	S	H	R	T	K	V	F	E	E	V	H	F	G	A	Q	E	K	A	K	K	L	Y	E	L	N	D	D	Y	E	V	L	F	L	Q	G	G	A
Template Known Secondary structure									S	S	.	.	S				.	.	.											T	S	S	S	G	G	G	S	S	S		G	G	G	S		S	S	S																			T			T	T							S	S
Template Predicted Secondary structure											.	.					.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.			10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation													.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		S	L	Q	F	A	X	I	P	X	N	L	.	.	.	.	.	.	.	A	L	N	G	V	C	E	Y	A	N	T	G	V	W	T	K	K	A	I	K	E	A	Q	I	L	G	V	.	.	.	.	.	.	.	.	.	.	.	.	N	V	K	T	V	A	S	S	E	E	S	N	F	D	H	I	P	R	V	E	F	.	.
Template Known Secondary structure													.	.	.	.	.	.	.			S	S								S													T	T		.	.	.	.	.	.	.	.	.	.	.	.									T	T	T	T	S		S							.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.								.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.													.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	.	D	I	L	C	L
Query Conservation																																																																												.
Alig confidence		.	.	.	.	.	.	.	.													.										.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.											.
Template Conservation		.	.	.	.	.	.	.	.													.										.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	S	D	N	A	D	Y	A	Y	I	C	S	N	.	N	T	I	Y	G	T	Q	Y	Q	.	.	.	.	.	.	.	.	.	.	N	Y	P	K	T	K	T	P	L	I	V	D	A	S	S	D	.	.	.	.	.	.	.	.	F	F	S	R	K	V	D	F	S	N	I	A	L	F	Y	G
Template Known Secondary structure		.	.	.	.	.	.	.	.		T	T	S	S						S		.		T	T	T	T				S	.	.	.	.	.	.	.	.	.	.	S					S	S							G	G	G	.	.	.	.	.	.	.	.	T	T	S	S					T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.													.										.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template SS confidence
										135	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.											.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.									.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.												.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	.	.	.	.	.	.	.	.	.	.	.	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	.	E	S	G	D	W	Q	Q	Q	V	A	D	I	E
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		G	V	Q	K	N	A	G	I	S	G	L	S	C	I	F	I	R	K	D	X	L	E	R	S	K	N	K	Q	I	P	S	X	L	N	Y	L	T	H	A	E	N	Q	S	L	F	N	T	P	P	T	F	A	I	Y	X	F	N	L	E	X	D	W	L	L	N	Q	G	G	L	D	K	V	H	E	K	N	S	Q	K	A
Template Known Secondary structure			T	T	T	T	S	S		T	T																T					G	G	G								T	T	T		S	S																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.				.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure															.	.	.																																										.	.	.
Query SS confidence															.	.	.																																										.	.	.
Query Sequence		V	Q	L	R	E	Q	L	A	P	A	R	D	A	.	.	.	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	.	.	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T
Query Conservation															.	.	.																																										.	.	.
Alig confidence															.	.	.																																										.	.	.
Template Conservation
Template Sequence		T	X	L	Y	E	C	I	D	L	S	N	G	F	Y	K	G	H	A	D	K	K	D	R	S	L	X	N	V	S	F	N	I	A	K	N	K	D	L	E	P	L	F	V	K	E	A	E	E	A	G	X	I	G	L	K	G	H	R	I	L	G	G	I	R	A	S	I	Y	N	A	L	N	L	D	Q	V	K	T	L	C
Template Known Secondary structure										T	S	T	T	S				S	S		G	G	G	B		S	S							S	S		T	T												T	T					B			T	T	T		S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		415	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	N	R	A	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	X	K	E	F	Q	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions