Job Description P12995 Confidence 99.82% Date Thu Jan 5 11:33:14 GMT 2012 Rank 175 Aligned Residues 338 % Identity 11% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.			.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																			.	.																											.	.				.	.
Query SS confidence																.	.																			.	.																											.	.				.	.
Query Sequence		V	D	G	M	S	S	W	W	A	A	I	H	G	Y	.	.	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	.	.	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	.	.	E	C	V	.	.	F	L	A	D	S	G	S	V	A	V	E
Query Conservation																.	.																			.	.																											.	.				.	.
Alig confidence																.	.																			.	.																											.	.				.	.
Template Conservation
Template Sequence		I	N	L	S	I	G	V	C	C	N	D	D	G	D	L	H	I	F	D	S	V	L	N	A	D	K	L	V	T	E	N	Y	K	E	K	P	Y	L	L	G	N	G	T	E	D	F	S	T	L	T	Q	N	L	I	F	G	N	N	S	K	Y	I	E	D	K	K	I	C	T	I	Q	C	I	G	G	T	G	A	I	F
Template Known Secondary structure					S		S	S		B		T	T	S	S	B																								T	T	S	S															S	S		T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L
Query Conservation
Alig confidence										.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	L	E	F	L	K	M	.	.	.	.	.	.	L	N	V	E	T	L	Y	V	T	N	P	P	Y	I	N	H	V	N	M	I	E	S	R	G	F	N	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	N	F	F	D	Y	N	L	I	D	I	N	Y	D	L	F	L	N	D
Template Known Secondary structure									T	.	.	.	.	.	.	T	T								S	S											T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T	T
Template Predicted Secondary structure										.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.							120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																												.	.	.	.																.	.	.
Query SS confidence																																																												.	.	.	.																.	.	.
Query Sequence		M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	.	.	.	.	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	.	.	.
Query Conservation																																																												.	.	.	.																.	.	.
Alig confidence																							.	.																																				.	.	.	.																.	.	.
Template Conservation																							.	.
Template Sequence		L	R	N	I	P	N	G	S	S	V	I	L	Q	I	S	C	Y	N	P	C	S	.	.	V	N	I	E	E	K	Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I	I	F	D	I	A	Y	Q	G	F	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N	I	A	F	S	V	C	Q
Template Known Secondary structure					S		S	S								S	S		T	T	T		.	.																											S		T	T	T	S	S	S	S	T	T	G	G	G								T	T	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.								290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.									.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Query Sequence		C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	.	.	.	.	.	.	.	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	.	.	.	.	.	.	.	.	I	L	E	S	G	D	W	Q	Q	Q
Query Conservation																					.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.														.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.
Template Sequence		S	F	S	K	N	M	S	L	Y	G	E	R	A	G	A	L	H	I	V	C	K	N	Q	E	E	K	K	I	V	F	N	N	L	C	F	I	V	R	K	.	.	.	.	.	F	Y	S	S	P	V	I	H	T	N	R	I	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S	Q	R
Template Known Secondary structure				T	T	T	S			T	T	T	T									S	S																	T	.	.	.	.	.	T	T	S	S
Template Predicted Secondary structure																																									.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.						.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.						.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence		V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	.	.	.	.	.	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L
Query Conservation																				.	.	.	.	.
Alig confidence																				.	.	.	.	.																				.	.	.	.	.																		.	.	.						.
Template Conservation																																												.	.	.	.	.																		.	.	.						.
Template Sequence		I	T	N	N	R	I	L	F	F	N	K	L	E	T	Y	Q	K	K	Y	N	L	N	Y	D	W	N	V	Y	K	K	Q	R	G	L	F	S	F	V	P	L	L	A	.	.	.	.	.	K	I	A	E	H	L	K	T	H	H	I	Y	I	I	N	N	G	.	.	.	R	I	N	V	S	.	G	I	T	K	N	N	V
Template Known Secondary structure																	G	G	G	G	T					G	G	G	G	S	S			S	S					G	G	G	G	.	.	.	.	.	G	G	T	T	T	T	T	T	T	T					T	T	S	.	.	.				G	G	.	G			T	T
Template Predicted Secondary structure																																												.	.	.	.	.																		.	.	.						.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.						.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.				380	.	.	.	.		.	.	.	.	.	390	.
		411	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	L	T	A	A	V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Y	I	A	D	K	I	C	L	S	L	S	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions