Job Description P12995 Confidence 99.76% Date Thu Jan 5 11:33:14 GMT 2012 Rank 210 Aligned Residues 330 % Identity 10% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	.	.	.	T	P	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N
Query Conservation																																			.	.	.
Alig confidence																				.															.	.	.																							.	.	.
Template Conservation																				.																																								.	.	.
Template Sequence		E	D	A	K	K	R	A	R	R	I	L	Q	A	C	S	Q	G	V	.	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	.	.	.	K	I	L	V	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P
Template Known Secondary structure																		S		.															T	T	T					G	G	G					S	S										.	.	.								G	G	G	S								S
Template Predicted Secondary structure																				.																																								.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M	A	A	.	.	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M
Query Conservation																																																												.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.															.	.																			.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																																			.	.
Template Sequence		Q	Y	P	L	Y	S	A	V	I	S	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	.	.	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	.	.
Template Known Secondary structure				T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T									B	G	G	G	T	.	.	T	B														T	T	T	S									S	S		T	T	T		.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																																			.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.																	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.														.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query Sequence		R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	C	L	G	K	A	L	.	T	G	G	T	M	T	L	S	A	T
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.									.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation
Template Sequence		Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M
Template Known Secondary structure																				T								T	T	T	T		B			T	T													T						T	T									S	S	S	S	T	T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.										.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.
Query Sequence		L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	.	.	.	.	.	.	.	.	.	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A
Query Conservation																																							.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	I	N	L	H	P	E	I	K	G	Q	L	V	K	L	L	S	V	R	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P
Template Known Secondary structure					S																S															T					T	T	S	T	T																												T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.														.	.	.	.	.	.	.	390	.	.	.									.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Query Sequence		D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	E	Q	G	V	W	I	R	P	F	.	.	.	.	.	.	.	.	G	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Alig confidence		.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.											.	.
Template Conservation		.	.																																																																		.	.
Template Sequence		.	.	L	Q	G	A	M	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	T	Y	H	F	R	M	T	I	L	P	.	.	P	V	E	K	L	K	T	V	L	Q	K
Template Known Secondary structure		.	.			B	S	S																			T	T	S																B					G	G	G	T				T	T			B							S	.	.
Template Predicted Secondary structure		.	.																																																																		.	.
Template SS confidence
				435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.			500	.	.	.	.	.	.	.	.	.	510
		417	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	D	F	H	I	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions