Job Description P12995 Confidence 99.88% Date Thu Jan 5 11:33:14 GMT 2012 Rank 132 Aligned Residues 352 % Identity 11% Template c3hbxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana Resolution 2.67 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.
Predicted Secondary structure																																				.																																	.	.	.	.	.
Query SS confidence																																				.																																	.	.	.	.	.
Query Sequence		D	G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	.	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	.	.	.	.	.	F	L	A	D	S	G	S	V
Query Conservation																																				.																																	.	.	.	.	.
Alig confidence												.	.	.							.															.																																	.	.	.	.	.
Template Conservation												.	.	.							.
Template Sequence		D	G	N	P	R	L	N	L	A	S	.	.	.	F	V	T	T	W	M	.	E	P	E	C	D	K	L	I	M	S	S	I	N	K	N	Y	V	D	M	D	E	Y	P	V	T	T	E	L	Q	N	R	C	V	N	M	I	A	H	L	F	N	A	P	L	E	E	A	E	T	A	V	G	V	G	T	V	G	S	S	E
Template Known Secondary structure		S			G	G	G	B	T	T		.	.	.		S					.											T	T	T		B	T	T		T	T	T																			T	T					T	T									S	S
Template Predicted Secondary structure												.	.	.							.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	.	.	.	.	.	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Sequence		A	I	M	L	A	G	L	A	F	K	R	K	W	Q	N	K	R	K	A	E	G	K	P	V	D	K	P	N	I	V	T	G	A	N	V	Q	V	C	W	E	K	F	A	R	Y	F	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	K	E	V	K	L	S	E	G	Y	Y	.	.	.	.	.	V	M
Template Known Secondary structure																					T	T				S								T	T												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.								B	T	T	B		.	.	.	.	.	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.														.	.	.	180	.	.	.	.	.	.	.	.						.	190
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.
Predicted Secondary structure																																																			.	.	.	.	.	.																.	.
Query SS confidence																																																			.	.	.	.	.	.																.	.
Query Sequence		D	M	V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	.	.	.	.	.	.	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	.	.	T	G	K	L	F	A	C	E
Query Conservation																																																			.	.	.	.	.	.																.	.
Alig confidence											.	.	.																							.	.	.	.	.											.	.	.	.	.	.																.	.
Template Conservation											.	.	.																							.	.	.	.	.
Template Sequence		D	P	Q	Q	A	V	D	M	V	.	.	.	D	E	N	T	I	C	V	A	A	I	L	G	S	T	L	N	G	E	F	E	D	V	.	.	.	.	.	K	L	L	N	D	L	L	V	E	K	N	K	E	T	G	W	D	T	P	I	H	V	D	A	A	S	G	G	F	I	A	P	F	L	Y	P	E	L	E	W	D
Template Known Secondary structure											.	.	.		T	T								B	S		T	T	T			B				.	.	.	.	.																									T	T	G	G	G	T						S	S				S
Template Predicted Secondary structure											.	.	.																							.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.										.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.
Query Sequence		H	A	E	I	A	P	D	I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	.	.	.	.	.	.	.	.	.	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W
Query Conservation																																	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	L	P	L	V	K	S	I	N	V	S	G	H	Y	G	L	V	Y	A	G	I	G	W	V	I	W	R	N	K	E	D	L	P	E	E	L	I	F	H	I	N	Y	L	G	A	D	Q	P	T	F	T	L	N	F	S	K	G	S	S	Q	V	I	A	Q	Y	Y	Q	L	I	R	L	G	H	E	G	Y	R	N	V
Template Known Secondary structure		T	T	S	T	T															S	S							S	S	G	G	G	S		G	G	G						S	S	S	S							S			S		B	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.									.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																												.	.																				.	.	.	.	.	.	.	.
Query SS confidence																																												.	.																				.	.	.	.	.	.	.	.
Query Sequence		Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	.	.	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	.	.	.	.	.	.	.	.	G	K	L	I	Y	L	M	P	P
Query Conservation																																												.	.																				.	.	.	.	.	.	.	.
Alig confidence																																.												.	.																				.	.	.	.	.	.	.	.
Template Conservation																																.
Template Sequence		M	E	N	C	R	E	N	M	I	V	L	R	E	G	L	E	K	T	E	R	F	N	I	V	S	K	D	E	G	V	.	P	L	V	A	F	S	L	K	D	S	S	C	H	T	E	F	E	I	S	D	M	L	R	R	Y	G	W	I	V	P	A	Y	T	M	P	P	N	A	Q	H	I	T	V	L	R	V	V	I	R
Template Known Secondary structure																		T	T	T						S		S	S	S	S	.	S							S	S		S	S												T	T	T		B								T	T		T	T
Template Predicted Secondary structure																																.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	F	S	R	T	L	A	E	R	L	V	I	D	I	E	K	V	M	R	E
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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