Job Description P12995 Confidence 99.85% Date Thu Jan 5 11:33:14 GMT 2012 Rank 161 Aligned Residues 342 % Identity 15% Template c3h7fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.												.	.	.
Query SS confidence																																		.	.	.	.												.	.	.
Query Sequence		R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	.	.	.	.	M	S	H	V	M	F	G	G	I	T	H	.	.	.	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A
Query Conservation																																		.	.	.	.												.	.	.
Alig confidence											.	.					.	.	.															.	.	.	.												.	.	.
Template Conservation											.	.					.	.	.
Template Sequence		R	D	T	L	E	M	I	A	S	.	.	E	N	F	V	.	.	.	P	R	A	V	L	Q	A	Q	G	S	V	L	T	N	K	Y	A	E	G	L	P	G	R	R	Y	Y	G	G	C	E	H	V	D	V	V	E	N	L	A	R	D	R	A	K	A	L	F	G	A	E	F	A	N	V	Q	P	H	S	G	A	Q	A
Template Known Secondary structure				S					T	T	.	.					.	.	.									T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S
Template Predicted Secondary structure											.	.					.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.			.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A
Query Conservation
Alig confidence										.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	A	V	L	H	A	L	.	.	.	.	.	.	.	M	S	P	G	E	R	L	L	G	L	D	L	A	N	G	G	H	L	T	H	G	M	R	L	N	F	S	G	K	L	Y	E	N	G	F	Y	G	V	D	P	A	T	H	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	M	D	A	V	R
Template Known Secondary structure										.	.	.	.	.	.	.			T	T								G	G	G	T			G	G	G	T		T	T	S					S	S									T	T	T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.															.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	K	A
Query Conservation
Alig confidence												.													.	.	.	.	.	.	.	.																							.																	.								.
Template Conservation												.													.	.	.	.	.	.	.	.																							.																	.								.
Template Sequence		A	T	A	L	E	F	R	P	K	V	.	I	I	A	G	W	S	A	Y	P	R	V	L	.	.	.	.	.	.	.	.	D	F	A	A	F	R	S	I	A	D	E	V	G	A	K	L	L	V	D	M	A	H	.	F	A	G	L	V	A	A	G	L	H	P	S	P	V	P	H	.	A	D	V	V	S	T	T	.	V
Template Known Secondary structure										S		.						S	S			S			.	.	.	.	.	.	.	.													T								T	T	.	T						T	T	S	S			S	T	T	T	.		S						.
Template Predicted Secondary structure												.													.	.	.	.	.	.	.	.																							.																	.								.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.									180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.		.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		H	T	L	G	G	G	R	S	G	L	I	V	G	K	Q	Q	Y	A	K	A	I	N	S	.	A	V	F	P	G	Q	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	I	A	A	T	P	E	F	A	D	R	Q	R	R	T	L	S	G	A	R	I	I	A	D	R	L	M	A	P	D	V	A	K	A
Template Known Secondary structure								S								G	G	G							.			T	T	T	T		S	S																	T	S																						S	S						T
Template Predicted Secondary structure																									.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		356	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.												.	.	.	.	.	400	.	.	.	.	.	.					.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure											.	.	.											.																					.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Query SS confidence											.	.	.											.																					.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Query Sequence		V	A	D	V	R	V	L	G	A	.	.	.	I	G	V	V	E	T	T	H	P	V	.	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	.	.	.	.	.	.	.	.	.	.	K	L	I	Y	L	M	P	P	Y	I	I	L	.	.	.	.	P	Q	Q	L	Q	R	L	T	A	A
Query Conservation											.	.	.											.																					.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Alig confidence											.	.	.											.																					.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation
Template Sequence		G	V	S	V	V	S	G	G	T	D	V	H	L	V	L	V	D	L	R	D	S	P	L	D	G	Q	A	A	E	D	L	L	H	E	V	G	I	T	V	N	R	N	A	V	P	N	D	P	R	P	P	M	V	T	S	G	L	R	I	G	T	P	A	L	A	T	R	G	F	G	D	T	E	F	T	E	V	A	D	I
Template Known Secondary structure		T				G	G	G	S		S	S	S							T	T	S	S													T	T									T	T		S	S		T	T	T		S													T
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		417	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	T	A	L	A	T
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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