Job Description P12995 Confidence 99.88% Date Thu Jan 5 11:33:14 GMT 2012 Rank 127 Aligned Residues 332 % Identity 9% Template c3ffrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution Resolution 1.75 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.																					.
Query SS confidence																																													.	.																					.
Query Sequence		G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	.	.	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	.	C	V	F	L	A	D	S	G	S	V	A	V	E	V
Query Conservation																																													.	.																					.
Alig confidence												.	.					.	.	.																									.	.																					.
Template Conservation												.	.					.	.	.
Template Sequence		X	N	N	K	I	Y	F	T	P	G	.	.	P	S	E	L	.	.	.	Y	P	T	V	R	Q	H	X	I	T	A	L	D	E	K	I	G	V	I	S	H	R	S	K	K	F	E	E	V	Y	K	T	A	S	D	N	L	K	T	L	L	E	L	P	S	N	Y	E	V	L	F	L	A	S	A	T	E	I	W	E	R
Template Known Secondary structure										S	S	.	.	S				.	.	.		T	T											T	T	T	T	T	S		T	T	S																		T	T			T	T							S
Template Predicted Secondary structure												.	.					.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10			.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	.	.	.	.	.	.	.	.	Q	N	C	V	E	K	K	S	F	H	C	V	N	G	S	F	S	K	R	F	Y	E	F	A	G	E	L	G	R	E	A	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	A	A	F	G	K	G	F	Y	P	A	D
Template Known Secondary structure				.	.	.	.	.	.	.	.					S	S								S													T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T					G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.									.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																									.	.	.	.	.	.	.	.	.	120	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	K	A	L	T	G
Query Conservation
Alig confidence																											.	.	.	.	.																									.	.	.	.	.
Template Conservation																											.	.	.	.	.																									.	.	.	.	.
Template Sequence		I	T	V	P	A	D	A	E	I	I	C	L	T	H	N	E	T	S	S	G	V	S	X	P	V	.	.	.	.	.	E	D	I	N	T	F	R	D	K	N	K	D	A	L	I	F	V	D	A	V	S	S	L	P	.	.	.	.	.	Y	P	K	F	D	W	T	K	I	D	S	V	F	F	S	V	Q	C	F	G	L
Template Known Secondary structure						T	T								S			T	T	T	T						.	.	.	.	.				T	T	S	G	G	G	S	T	T	S							T	T	T	T	T	.	.	.	.	.	S	S				T	T	S		S
Template Predicted Secondary structure																											.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.						.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.																				.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		P	.	A	G	L	G	V	W	I	L	N	D	R	V	I	E	K	S	K	A	L	L	A	K	R	K	S	I	G	T	Y	H	T	I	P	S	X	L	E	K	A	R	V	N	Q	T	P	E	T	P	N	A	X	N	I	F	L	L	G	K	V	T	G	D	X	L	Q	I	S	A	D	G	I	R	K	Q	T	E	E	K
Template Known Secondary structure			.	S																					T	T					S	T	T	S									T	T	T			S	S
Template Predicted Secondary structure			.
Template SS confidence
		195		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.						.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	.	.	.	.	.	F	G	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T
Query Conservation																																																							.	.	.	.	.
Alig confidence																																																							.	.	.	.	.
Template Conservation
Template Sequence		A	A	L	I	N	T	Y	I	E	S	S	K	V	F	S	F	G	V	E	D	A	K	L	R	S	X	T	T	I	V	A	N	T	T	X	L	P	G	E	I	N	K	I	L	E	P	F	D	X	A	V	G	A	G	Y	G	S	K	K	E	T	Q	I	R	I	A	N	F	P	A	H	S	L	E	Q	V	H	K	L	V
Template Known Secondary structure													S	S				S	S	S		G	G	G	B		S	S							S	S										G	G	G	T							S	G	G	G	T	T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		415	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	N	R	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	T	L	K	E	K	I
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions