Phyre 2 alignment of P12995 with c3fd0B

Job Description P12995
Confidence 99.70% Date Thu Jan 5 11:33:14 GMT 2012

Rank 226 Aligned Residues 294

% Identity 11% Template c3fd0B_

PDB info PDB header:lyase Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution

Resolution 2.12 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	63	.	.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																																				.	.	.
Query SS confidence										.	.	.																																				.	.	.
Query Sequence	Q	L	N	A	A	M	K	S	Q	.	.	.	I	D	A	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	.	.	.	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R
Query Conservation										.	.	.																																				.	.	.
Alig confidence										.	.	.																																				.	.	.		.	.												.	.	.	.	.	.	.
Template Conservation																																																				.	.												.	.	.	.	.	.	.
Template Sequence	K	V	L	D	A	F	Q	E	N	K	V	S	D	F	H	F	N	P	S	T	G	Y	G	Y	D	D	E	G	R	D	T	L	E	R	V	Y	A	S	V	F	K	T	E	A	A	L	V	R	P	Q	I	.	.	I	S	G	T	H	A	I	S	T	V	L	.	.	.	.	.	.	.	F	G	I	L	R	P	G	D	E
Template Known Secondary structure									T	T			G	G	G	G					T	T		T	T																T		S						T	T	S	.	.		S										.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure																																																				.	.												.	.	.	.	.	.	.
Template SS confidence
	32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.								.	.	.	.	.	.	100	.	.

	137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Sequence	L	L	Y	I	T	G	E	P	Y	D	T	L	E	E	I	V	G	I	R	S	E	G	Q	G	S	L	K	D	F	Q	I	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	D	A	V	P	L	L	P	N	G	E	I	D	Y	P	A	V	S	K	K	I	S	A	N	T	K	X	I	G	I	Q	R	S	.	R	G
Template Known Secondary structure					S	S	S			T	T						T	S	S		S	S	S			T	G	G	G	T				.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	S												T	T									S	.		T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template SS confidence
	103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.													.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.

	217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	.	.	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E
Query Conservation																								.	.
Alig confidence																								.	.																				.	.	.
Template Conservation																																													.	.	.
Template Sequence	Y	A	D	R	P	S	F	T	I	E	K	I	K	E	X	V	T	F	V	K	N	I	N	P	N	I	I	V	F	V	D	N	C	Y	G	E	F	V	E	R	I	E	P	T	.	.	.	E	V	G	A	D	I	I	A	G	S	L	I	N	P	G	G	G	L	A	K	T	G	G	Y	I	A	G	R	N	T	L	V	D
Template Known Secondary structure	T	S	S	S																				T	T	S							T	T	T	T	T	T	S	S			G	G	.	.	.	G	T	T		S									T	T	T	T	T			S
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

	295	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure			.	.																																																										.	.
Query SS confidence			.	.																																																										.	.
Query Sequence	T	I	.	.	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	.	.	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T
Query Conservation			.	.																																																										.	.
Alig confidence			.	.																												.	.	.	.	.																										.	.										.
Template Conservation																																.	.	.	.	.																																					.
Template Sequence	L	C	G	Y	R	L	T	T	P	G	I	G	R	E	A	G	A	S	L	Y	S	L	L	E	X	Y	Q	G	F	F	L	.	.	.	.	.	A	P	H	V	T	A	Q	A	I	K	G	A	R	F	T	A	A	X	L	A	E	F	G	V	E	A	D	P	L	W	D	A	K	R	T	D	.	L	I	Q	S	V	S	F
Template Known Secondary structure							S		T	T	T	G	G	G					T	T												.	.	.	.	.																						T	T					S		T	T	S			S	S	.	S
Template Predicted Secondary structure																																.	.	.	.	.																																					.
Template SS confidence
	248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.

	371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	H	S	K	D	K	X	I	A	F	A	Q	A	I	Q	A	A	S
Template Known Secondary structure	S															T	S
Template Predicted Secondary structure
Template SS confidence
	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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