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Job DescriptionP12995
Confidence99.69%DateThu Jan 5 11:33:14 GMT 2012
Rank227Aligned Residues357
% Identity11%Templatec3f6tA_
PDB info PDB header:transferaseChain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60.........70.........80.........90....... ..100.........110.........
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Query Sequence  LVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVA. . . . . MTPQPLECVFLADSGSVAVEVA
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Template Sequence  FLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYA
Template Known Secondary structure  TT


T
S

SSSS

TTT


GGG
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   100.........110.........120.........130.........140.........150.........160.........170.........
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA
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Template Sequence  FHSLAEN. . HLLKKGDKIAINEPIFTPYL. . . . . . . . . . . . . . . . RIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLK.
Template Known Secondary structure  T..TSS
TT
SS

................TSGGGGGS


TTTTS
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   180...... ...190.........200...... ...210.........220.........230.........240
 
   200.........210.........220.........230........ .240.........250.........260.........270........
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Query Sequence  AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE. GILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTG
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Template Sequence  . . DPSIKALIVVNPTNPTS. . KEFDTNALNAIKQAVEKNPKLXIISDEVYGAFVPNFKSIYSVVPYNTXLVYSYSL. FGC
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TTSS
TTT
..B



TT

TTGGGSTT


SGGG


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   241........250....... ..260.........270.........280.........290.........300.........310.. ...
 
   279280.........290..... ....300.........310.........320...
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Query Sequence  GTMTLSATLTTREVAET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ISNGEAGCFMHGPTFMGNPLACAAANAS
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Template Sequence  TGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKXKFIDRLCADSRSIGLYHTAGLSTPQQIXEALFSXT
Template Known Secondary structure  GGG
SS
TS
TT
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GGG

TTTTTGGG
S

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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   324..... 330.........340.........350.........360.........370. ........380.
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Query Sequence  LAILES. . . . . GDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETT. . . . . . . . . . . . . . . . . HPVNMAALQK
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Template Sequence  HLLTSTNGGSDDPYIDIARKLVSERYDQLHDAXQAPKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLK
Template Known Secondary structure  TT
BGGGTB
T




STTB

S


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   397..400.........410.........420.........430.........440.........450.........460.........470......
 
   382.......390... ......400.........410.........420......
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Query Sequence  FFVEQGVWIRPF. . . . . . GKLIYLMPPYIILPQQLQRLTAAVNRAVQDETF
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Template Sequence  LAEKNGVVLVDGVGFGAKPGELRVSQA. NLPTEDYALIGKQVLELLKEYYE
Template Known Secondary structure  TTSSS
TT
SSTTSS.SS
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   477..480.........490.........500... ......510.........520......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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