Job Description P12995 Confidence 99.85% Date Thu Jan 5 11:33:14 GMT 2012 Rank 162 Aligned Residues 336 % Identity 11% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		S	D	G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	.	.	L	E	C	V	F	L	A	D	S	G	S	V	A	V	E
Query Conservation																																																																	.	.
Alig confidence														.	.							.																																											.	.
Template Conservation														.	.							.
Template Sequence		T	P	K	K	R	G	L	D	L	G	I	G	.	.	E	P	Q	F	E	T	.	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	L	N	I	Y	P	K	S	A	F	E	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K	I	E	L	K	E	N	E	L	I	S	T	L	G	S	R	E	V	L	F
Template Known Secondary structure				S	S				B					.	.	S			S			.										T	T	G	G	G	G	G	S				T	T																		S					G	G	G					S	S	S
Template Predicted Secondary structure														.	.							.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L
Query Conservation
Alig confidence										.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation										.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Sequence		N	F	P	S	F	V	L	F	.	.	.	.	.	D	Y	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	I	Y	E	G	A	A	K	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	K	S	L	L	X	P	L	T	K	E	N	D	F	T	P	S	L	N	E	K	E	L	Q	.	.
Template Known Secondary structure								T	T	.	.	.	.	.	T		S	S								S			T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										G	G	G	T	T											.	.
Template Predicted Secondary structure										.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
		96	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.										.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.
Query Sequence		M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	.	.	.	.	.	.	.	.	.	H	A	E	I	A	P	D
Query Conservation																																																																		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																.	.																																										.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																.	.
Template Sequence		.	.	.	.	.	.	E	V	D	L	V	I	L	N	S	P	N	N	P	T	G	.	.	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V
Template Known Secondary structure		.	.	.	.	.	.			S						S	S		T	T	T		.	.																		T	T								T	T	T	T		B	S	S	S												T	T		T	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.																.	.
Template SS confidence
								153	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A
Query Conservation
Alig confidence																																				.	.	.	.	.																			.	.	.
Template Conservation																																				.	.	.	.	.																			.	.	.
Template Sequence		I	H	S	L	S	K	R	S	S	A	P	G	L	R	S	G	F	I	A	G	D	S	R	L	L	E	K	Y	K	A	F	R	A	Y	.	.	.	.	.	L	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	.	.	.	D	D	R	H	A	E	F	F	R	N	I	Y	A	N	N	L	K	L	A	R
Template Known Secondary structure					S					T		G	G	G																						.	.	.	.	.																			.	.	.		S
Template Predicted Secondary structure																																				.	.	.	.	.																			.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.						.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.										.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.
Query Sequence		P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	.	.	.	.	.	.	.	.	.	G	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R
Query Conservation																																															.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.												.	.																				.	.	.	.	.	.	.	.	.									.	.
Template Conservation												.	.	.												.	.																																					.	.
Template Sequence		K	I	F	K	N	T	L	I	Y	P	.	.	.	Y	S	F	Y	V	Y	L	P	V	Q	N	.	.	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	R	I	G	A	D	Y	V	R	L	A	L	.	.	V	Y	D	T	P	L	L	E	K	P	L	E	I	I	E	T
Template Known Secondary structure				S	T	T					S	.	.	.	B	S	S							S		.	.															B				G	G	G	G		S	T	T	T	T	T	T							.	.		S
Template Predicted Secondary structure												.	.	.												.	.																																					.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	Q	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	E	N	H
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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