Job Description P12995 Confidence 99.90% Date Thu Jan 5 11:33:14 GMT 2012 Rank 111 Aligned Residues 367 % Identity 11% Template c3dzzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Resolution 1.61 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		T	S	P	L	P	V	Y	P	V	V	S	A	E	G	C	E	L	I	L	S	D	G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	.	.
Query Conservation																																																																																.	.
Alig confidence																																	.	.							.																									.														.	.
Template Conservation																																	.	.							.																									.
Template Sequence		K	Q	Y	D	F	T	H	V	P	K	R	Q	G	N	S	I	K	W	G	V	L	K	E	K	E	L	P	X	W	I	A	.	.	E	X	D	F	K	I	.	A	P	E	I	X	A	S	X	E	E	K	L	K	V	A	A	F	G	Y	E	S	V	P	A	.	E	Y	Y	K	A	V	A	D	W	E	E	I	E	H	R
Template Known Secondary structure				S			S	S						T	T		T	T	T	T	T			T	T						S	S	.	.			S	S			.													T	T											.															S
Template Predicted Secondary structure																																	.	.							.																									.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	P	K	E	D	W	C	V	F	A	S	G	V	V	P	A	I	S	A	X	V	.	.	.	.	.	.	.	.	R	Q	F	T	S	P	G	D	Q	I	L	V	Q	E	P	V	Y	N	X	F	Y	S	V	I	E	G	N	G	R	R	V	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Known Secondary structure						G	G	G					S											.	.	.	.	.	.	.	.				S		T	T							S	S			T								T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.																	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F
Query Conservation
Alig confidence																							.	.																		.	.
Template Conservation																							.	.																		.	.
Template Sequence		D	L	I	Y	E	N	S	K	Y	S	V	N	W	A	D	L	E	E	K	L	A	.	.	T	P	S	V	R	X	X	V	F	C	N	P	H	N	P	I	G	.	.	Y	A	W	S	E	E	E	V	K	R	I	A	E	L	C	A	K	H	Q	V	L	L	I	S	D	E	I	H	G	D	L	V	L	T	D	E	D	I
Template Known Secondary structure							T	T														T	.	.	S	T	T								S	S	B	T	T	T	T	.	.	B																	T	T								T	T	G	G	G	B		S	S
Template Predicted Secondary structure																							.	.																		.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		259	260	.	.						.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		A	C	E	H	.	.	.	.	.	A	E	I	A	P	D	I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.																																																													.
Template Conservation																																																																							.
Template Sequence		T	P	A	F	T	V	D	W	D	A	K	N	W	V	V	S	L	I	S	P	S	T	F	N	L	A	A	L	H	A	A	C	A	I	I	P	N	P	D	L	R	A	R	A	E	E	S	F	F	L	A	G	I	G	E	P	N	L	L	A	I	P	A	A	I	A	A	Y	E	.	E	G	H	D	W	L	R	E	L	K
Template Known Secondary structure				G	G	G	S		T	T	G	G	G	G											S		G	G	G									S															T		S	S			T	T											.
Template Predicted Secondary structure																																																																							.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.								.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure																																									.															.								.	.	.	.	.	.	.
Query SS confidence																																									.															.								.	.	.	.	.	.	.
Query Sequence		Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	.	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	.	G	V	W	I	R	P	F	.	.	.	.	.	.	.	G	K	L	I	Y	L	M	P	P	Y	I
Query Conservation																																									.															.								.	.	.	.	.	.	.
Alig confidence																														.											.															.								.	.	.	.	.	.	.										.	.
Template Conservation																														.																																																		.	.
Template Sequence		Q	V	L	R	D	N	F	A	Y	A	R	E	F	L	A	K	E	V	P	E	V	K	V	L	D	S	N	A	.	S	Y	L	A	W	V	D	I	S	A	L	G	X	N	A	E	D	F	C	K	Y	L	R	E	K	T	G	L	I	I	S	A	G	N	G	Y	R	G	N	G	H	E	F	V	R	I	N	L	A	.	.
Template Known Secondary structure																				T	T	S						S	B	.	S	S							G	G	G		S																				G	G	G	G		T	T	G	G	G								.	.
Template Predicted Secondary structure																														.																																																		.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	P	K	E	L	V	I	D	G	X	Q	R	L	K	Q	G	V	L	N
Template Known Secondary structure		S																		T
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions