Job Description P12995 Confidence 99.91% Date Thu Jan 5 11:33:14 GMT 2012 Rank 86 Aligned Residues 340 % Identity 14% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.						.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.
Query SS confidence																																													.	.	.	.	.
Query Sequence		D	G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	.	.	.	.	.	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A
Query Conservation																																													.	.	.	.	.
Alig confidence												.	.	.	.	.	.																												.	.	.	.	.
Template Conservation												.	.	.	.	.	.
Template Sequence		D	G	W	V	H	F	D	A	P	A	.	.	.	.	.	.	G	M	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	A	D	P	G	G	V	V	L	G	A	D	R	A	V	L
Template Known Secondary structure		S	S					B	G	G	G	.	.	.	.	.	.																					S	S	S		S	S	S																						T			G	G	G					S
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A
Query Conservation
Alig confidence							.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	L	L	A	.	.	.	.	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	G	A	K	V	K	W	A	E	V	D	I	E	T	G	E	L	P	T	W	Q	W	E	S	L	I
Template Known Secondary structure							.	.	.	.			T	G	G	G	G	B	T	T							T	T	S		G	G	G	T											.	.	.	.	.	.	.	.	.	.	.	.	B										T	T	T					G	G	G
Template Predicted Secondary structure							.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.													130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	K	A
Query Conservation
Alig confidence		.	.	.	.	.	.																							.	.	.	.	.																									.	.	.	.	.
Template Conservation		.	.	.	.	.	.																							.	.	.	.	.																									.	.	.	.	.
Template Sequence		.	.	.	.	.	.	S	K	S	T	R	L	V	A	V	N	S	A	S	G	T	L	G	G	V	T	D	L	.	.	.	.	.	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	.	.	.	.	.	R	L	L	D	I	R	E	T	D	A	D	V	V	T	V	N	A	H
Template Known Secondary structure		.	.	.	.	.	.		T	T								S	B		T	T	T		B	B				.	.	.	.	.										T	T								T	T	T	T	T	T	.	.	.	.	.											S						G	G
Template Predicted Secondary structure		.	.	.	.	.	.																							.	.	.	.	.																									.	.	.	.	.
Template SS confidence
								155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.																		.	330	.	.	.	.
Predicted Secondary structure																																				.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	.	.	.	.	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	D	W	Q	Q
Query Conservation																																				.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	W	G	G	P	P	I	G	A	M	V	F	R	D	P	S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A
Template Known Secondary structure		G	G	T	S		S							S							T	S					S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.															.	.	.	.	.	400
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	I	Y	L	M
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.
Template Sequence		Y	L	N	R	V	F	D	Y	L	M	V	S	L	R	S	L	P	L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	K	V	.	P	A	D	R	V	V	Q	R	L	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G
Template Known Secondary structure																T		T	T								S	S	B		S							T	T	B	.												T	T								S								T	T	T	T	T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	H	Y	S	T	M	A	E	V	D	Q	L	V	R	A	L	A	S
Template Known Secondary structure				T	T															T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions