Job Description P12995 Confidence 99.22% Date Thu Jan 5 11:33:14 GMT 2012 Rank 235 Aligned Residues 307 % Identity 10% Template c3bwnF_ PDB info PDB header:transferase Chain: F: PDB Molecule:l-tryptophan aminotransferase; PDBTitle: l-tryptophan aminotransferase Resolution 2.25 Å

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		54	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70	.	.						.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.								.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.										.	.	.	.	.																										.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.										.	.	.	.	.																										.	.	.	.	.	.	.
Query Sequence		A	A	I	H	G	Y	N	H	P	Q	.	.	.	.	.	.	L	N	A	A	M	K	S	Q	I	.	.	.	.	.	D	A	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	.	.	.	.	.	.	.	M	T	P	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A
Query Conservation												.	.	.	.	.	.										.	.	.	.	.																										.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.										.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	N	L	D	H	G	D	P	T	A	Y	E	E	Y	W	R	K	M	G	D	R	C	T	V	T	I	R	G	C	D	L	M	S	Y	F	S	D	M	T	N	L	C	W	F	L	E	P	E	L	E	D	A	I	K	D	L	H	G	V	V	G	N	A	A	T	E	D	R	Y	I	V	V	G	T	G	S	T	Q	L
Template Known Secondary structure						S	S				G	G	G								G	G	G	G						T	T	T	T		S	S		S		T	T	S	S	S	T	T	S																	S	B			T	T	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A
Query Conservation
Alig confidence							.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	Q	A	A	V	.	.	.	H	A	L	S	S	L	A	R	S	Q	P	V	S	V	V	A	A	A	P	F	Y	S	T	Y	V	E	E	T	T	Y	V	R	S	G	M	Y	K	W	E	G	D	A	W	G	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							.	.	.							S	S	S	S	S							S	S											T	T			T	T							S	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	K	A
Query Conservation
Alig confidence		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		.	.	.	.	.	.	K	K	G	P	Y	I	E	L	V	T	S	P	N	N	P	D	G	T	I	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	V	A	K	V	I	H	D	F	A	Y	Y	W	P	H	Y	T	P	.	.	.	I	T	R	R	Q	D	H	D	I	M	L	F	T	F	S	K	I
Template Known Secondary structure		.	.	.	.	.	.		S	S								S	S		T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T		S	T	T	T	S		.	.	.			S		B			S
Template Predicted Secondary structure		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
								155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.															.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		276	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.													.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure												.																																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	G	G	T	M	T	L	S	A	.	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	.	.	.	.	.	.	.	.	.	.	.	.	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q
Query Conservation												.																																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		T	G	H	A	G	S	R	I	G	W	A	L	V	K	D	K	E	V	A	K	K	M	V	E	Y	I	I	V	.	.	.	.	.	N	S	I	G	V	S	K	E	S	Q	V	R	T	A	K	I	L	N	V	L	K	E	T	C	K	S	E	S	E	S	E	N	F	F	K	Y	G	R	E	M	M	K	N	R	W	E	K
Template Known Secondary structure					G	G	G																							.	.	.	.	.			S	S																					T			S	T	T	T	S
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.						.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.									.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.							.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Query Sequence		L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	.	.	.	.	.	.	.	.	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	.	.	.	.	.	.	G	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q
Query Conservation																																	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.																					.	.	.	.	.	.									.	.
Template Conservation																																																																											.	.
Template Sequence		L	R	E	V	V	K	E	S	D	A	F	T	L	P	K	Y	P	E	A	F	C	N	Y	F	G	K	S	L	E	S	Y	P	A	F	A	W	L	G	T	K	E	E	T	D	L	V	S	E	L	R	R	H	K	V	M	S	R	A	G	E	R	C	G	S	D	K	K	H	V	R	V	S	M	.	.	L	S	R	E	D
Template Known Secondary structure								T	S	S	S												T	T	T	T								S							S	S	S									T	T	T						T	G	G	G	T	S		T	T						S	.	.		S
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.
		409	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	Q	R	L	T	A	A	V	N	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	N	V	F	L	E	R	L	A	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions