Job Description P12995 Confidence 99.93% Date Thu Jan 5 11:33:14 GMT 2012 Rank 71 Aligned Residues 355 % Identity 11% Template c2zc0C_ PDB info PDB header:transferase Chain: C: PDB Molecule:alanine glyoxylate transaminase; PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase Resolution 2.30 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.
Query Sequence		S	D	G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	.	.	.	.	.	.	Q	P	L	E	C	V	F	L	A	D	S	G	S
Query Conservation																																																															.	.	.	.	.	.
Alig confidence														.	.																																																.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		K	K	G	V	K	L	I	S	L	A	A	G	.	.	D	P	D	P	E	L	I	P	R	A	V	L	G	E	I	A	K	E	V	L	E	K	E	P	K	S	V	M	Y	T	P	A	N	G	I	P	E	L	R	E	E	L	A	A	F	L	K	K	Y	D	H	L	E	V	S	P	E	N	I	V	I	T	I	G	G	T
Template Known Secondary structure		T	S	S						S				.	.				T	T	T	S																	G	G	G	G	S				T	T																	S						G	G	G
Template Predicted Secondary structure														.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	L	D	L	L	G	.	.	.	.	.	.	.	.	R	V	L	I	D	P	G	D	V	V	I	T	E	N	P	S	Y	I	N	T	L	L	A	F	E	Q	L	G	A	K	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	P	V	D	N	D	G	M	R	V	D	L	L	E	E
Template Known Secondary structure									.	.	.	.	.	.	.	.						T	T								S											T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.									.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		K	I	K	E	L	K	A	K	G	Q	K	V	K	L	I	Y	T	I	P	T	G	Q	N	P	M	G	V	T	M	.	S	M	E	R	R	K	A	L	L	E	I	A	S	K	Y	D	L	L	I	I	E	D	T	A	Y	N	F	M	R	Y	E	G	G	D	I	V	P	L	K	A	L	D	N	E	G	R	V	I	V	A
Template Known Secondary structure									T	T											S	S		T	T	T					.																T								T	T	T	T		B	S	S		S	S				G	G	G	G		S	S
Template Predicted Secondary structure																															.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		274	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		K	A	L	T	.	.	.	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		G	T	L	S	K	V	L	G	T	G	F	R	I	G	W	I	I	A	E	G	E	I	L	K	K	V	L	M	Q	K	Q	P	I	D	F	C	A	P	A	I	S	Q	Y	I	A	L	E	Y	L	K	R	G	Y	F	E	K	Y	H	L	E	G	A	L	L	G	Y	K	E	K	R	D	I	M	L	K	A	L	E	N	H
Template Known Secondary structure				S						S	S	S																				T	T	T	T	S	S	S														T	T						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.										.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																																						.								.	.	.	.	.	.	.	.	.
Query SS confidence																																						.								.	.	.	.	.	.	.	.	.
Query Sequence		R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	.	G	V	W	I	R	P	F	.	.	.	.	.	.	.	.	.	G	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A
Query Conservation																																						.								.	.	.	.	.	.	.	.	.
Alig confidence													.																									.								.	.	.	.	.	.	.	.	.										.
Template Conservation													.																																																			.
Template Sequence		L	P	N	A	E	F	T	K	P	I	A	.	G	M	F	V	M	F	F	L	P	E	G	A	D	G	I	S	F	A	N	E	L	M	E	R	E	G	V	V	V	V	P	G	K	P	F	Y	T	D	E	S	G	K	N	A	I	R	L	N	F	S	.	R	P	S	K	E	E	I	P	I	G	I	K	K	L	A	K	L
Template Known Secondary structure			S	S	S						S	B	.	S	S							S	T	T													T	T					B			G	G	G		S	S	S			T	T							S	.	S	S		T	T
Template Predicted Secondary structure													.																																																			.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		421	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	K	E	K
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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