Job Description P12995 Confidence 99.88% Date Thu Jan 5 11:33:14 GMT 2012 Rank 129 Aligned Residues 328 % Identity 15% Template c2yrrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class v; PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8 Resolution 1.86 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	.	.	V	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A
Query Conservation																																																				.	.
Alig confidence																																																				.	.																.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.
Template Sequence		L	L	T	P	G	P	T	P	I	P	E	R	V	Q	K	A	L	L	R	P	M	R	G	H	L	D	P	E	V	L	R	V	N	R	A	I	Q	E	R	L	A	A	L	F	D	P	G	E	G	A	L	V	A	A	L	A	G	S	G	S	L	G	M	E	A	G	L	.	.	.	.	.	.	.	.	A	N	L	D	R
Template Known Secondary structure				S	S	S	S									G	G	G	G	S					T	T																							T	T							S	S											.	.	.	.	.	.	.	.		T		S
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.									70	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.												.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.												.	.	.
Template Sequence		G	P	V	L	V	L	V	N	G	A	F	S	Q	R	V	A	E	M	A	A	L	H	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	E	V	L	D	F	P	P	G	E	P	V	.	.	.	.	.	.	D	P	E	A	V	A	R	A	L	K	R	.	.	.	R	R	Y	R	M	V	A	L	V	H
Template Known Secondary structure										S													T	T		.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S			.	.	.	.	.	.												.	.	.	S			S						S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.												.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.														.	100	.	.	.	.	.	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A
Query Conservation
Alig confidence												.	.	.	.																							.	.	.																												.
Template Conservation												.	.	.	.																							.	.	.																												.
Template Sequence		G	E	T	S	T	G	V	L	N	P	.	.	.	.	A	E	A	I	G	A	L	A	K	E	A	G	A	L	F	F	L	D	A	V	T	T	.	.	.	L	G	M	L	P	F	S	M	R	A	M	G	V	D	Y	A	F	T	G	S	Q	K	C	L	S	A	P	.	P	G	L	A	P	I	A	A	S	L	E	A	R
Template Known Secondary structure				T	T	T	T					.	.	.	.												T								T	T	T	.	.	.	T	T	T	S								T		S						T	T	S	T	T				.	S	S
Template Predicted Secondary structure												.	.	.	.																							.	.	.																												.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.
		294	.	.	.	.	.	300	.	.														.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	I	S	N	G	E	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.
Template Conservation																																																																								.
Template Sequence		K	A	F	T	G	K	R	G	W	Y	L	D	L	A	R	V	A	E	H	W	E	R	G	G	Y	H	H	T	T	P	V	L	L	H	Y	A	L	L	E	A	L	D	L	V	L	E	E	G	V	A	A	R	E	R	R	A	R	E	V	Y	A	W	V	L	E	E	L	K	A	R	.	G	F	R	P	Y	P	K	A	S
Template Known Secondary structure								S		S	T	T										T	T				S	S																																											T	.	T				S		S	S	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.						.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																																			.	.	.	.	.								.
Query SS confidence																																			.	.	.	.	.								.
Query Sequence		V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	.	.	.	.	.	G	K	L	I	Y	L	M	.	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V	Q
Query Conservation																																			.	.	.	.	.								.
Alig confidence																																			.	.	.	.	.								.
Template Conservation
Template Sequence		P	L	P	T	V	L	V	V	R	P	P	E	G	V	D	A	D	R	L	V	R	A	L	Y	A	E	G	V	A	V	A	G	G	I	G	P	T	R	G	Q	V	L	R	L	G	L	M	G	E	G	A	R	R	E	A	Y	Q	A	F	L	K	A	L	D	R	A	L	A
Template Known Secondary structure		B		T	T								T	T													T	T								G	G	G	T	T	T							S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions