Job Description P12995 Confidence 99.93% Date Thu Jan 5 11:33:14 GMT 2012 Rank 72 Aligned Residues 342 % Identity 9% Template c2x5dD_ PDB info PDB header:transferase Chain: D: PDB Molecule:probable aminotransferase; PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa Resolution 2.25 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																									.	.																					.	.	.
Query SS confidence																																									.	.																					.	.	.
Query Sequence		G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	.	.	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	.	.	.	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A	V
Query Conservation																																									.	.																					.	.	.
Alig confidence												.	.							.																					.	.																					.	.	.
Template Conservation												.	.							.
Template Sequence		G	E	D	I	I	D	L	S	M	G	.	.	N	P	D	G	P	T	.	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	E	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	H	W	Y	R	D	R	Y	D	V	Q	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L
Template Known Secondary structure		T							S			.	.				S			.														S	T	T			S				T	T																							T	T	T	S					S	S
Template Predicted Secondary structure												.	.							.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R
Query Conservation
Alig confidence									.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	H	L	M	L	A	T	.	.	.	.	.	.	.	L	D	H	G	D	T	I	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	V	P	G	I	D	F	F	N	E	L	E	R
Template Known Secondary structure									.	.	.	.	.	.	.			T	T								S			T									T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	T	T	S
Template Predicted Secondary structure									.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.																						150	.	.	.	.	.	.	.	.	.	160	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.						.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	.	.	.	.	.	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C
Query Conservation																																																														.	.	.	.	.
Alig confidence																								.	.																																					.	.	.	.	.
Template Conservation																								.	.
Template Sequence		A	I	R	E	S	I	P	K	P	R	M	M	I	L	G	F	P	S	N	P	T	A	.	.	Q	C	V	E	L	D	F	F	E	R	V	V	A	L	A	K	Q	Y	D	V	M	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	K	D	I	A	V	E	F	F	T
Template Known Secondary structure					T	S	S	S			S						S	S		T	T	T		.	.																			T								T	T	T	T		B		T	T						G	G	G	S	T	T	G	G	G	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R
Query Conservation
Alig confidence																																.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.
Template Sequence		L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	P	E	L	V	S	A	L	A	R	I	K	S	.	.	.	.	.	.	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	R	Q	Y	Q	Q	R	R	D	V	L	V	K	G	L	R
Template Known Secondary structure		S	T	T	T	T	T			S																						.	.	.	.	.	.	T	T		S	S	S													S	S
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.							.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.					.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.								.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																						.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	.	.	.	.	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	.	.	.	.	.	.	.	G	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A
Query Conservation																						.	.	.	.																							.	.	.	.	.	.	.
Alig confidence																						.	.	.	.																							.	.	.	.	.	.	.										.	.
Template Conservation																																																																.	.
Template Sequence		E	A	G	W	M	V	E	N	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	H	L	G	S	L	E	F	A	K	K	L	L	Q	D	A	K	V	S	V	S	P	G	I	G	F	G	D	Y	G	D	D	H	V	R	F	A	L	I	.	.	E	N	R	D	R	L	R	Q	A	V	R	G	I	K	A	M
Template Known Secondary structure			T	T							S	B	S	S												T	T																				G	G	G	G		G	G	G	T	T								.	.	S
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		421	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	A	D
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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