Phyre 2 alignment of P12995 with c2x3lA

Job Description P12995
Confidence 99.72% Date Thu Jan 5 11:33:14 GMT 2012

Rank 221 Aligned Residues 290

% Identity 11% Template c2x3lA_

PDB info PDB header:lyase Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein; PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N
Query Conservation
Alig confidence																					.	.																				.	.	.	.	.	.	.	.																														.	.
Template Conservation																					.	.																				.	.	.	.	.	.	.	.																														.	.
Template Sequence	D	L	H	H	P	E	E	V	I	L	K	S	M	K	Q	V	E	K	H	S	.	.	D	Y	D	G	Y	F	L	V	N	G	T	T	S	G	I	L	S	V	I	.	.	.	.	.	.	.	.	Q	S	F	S	Q	K	K	G	D	I	L	M	A	R	N	V	H	K	S	V	L	H	A	L	D	I	S	Q	Q	.	.
Template Known Secondary structure		T	T	S		S	S											S		T	.	.	T							S	S											.	.	.	.	.	.	.	.		T	T	T	T	S	S	S						T	T													T		.	.
Template Predicted Secondary structure																					.	.																				.	.	.	.	.	.	.	.																														.	.
Template SS confidence
	51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.									90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.

	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.										.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.										.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	H	F	I	E	T	H	Q	S	P	L	T	N	H	Y	N	K	V	N	L	H	K	L	V	V	L	T	Y	P	.	.	N	Y	Y	G	E	T	F	N	V	.	.	.	.	.	E	E	V	I	K	S	L	H	Q	L	N
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T	S	S														S	S	.	.		T	T	S						.	.	.	.	.										T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.										.	.	.	.	.
Template SS confidence
																								119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.						.	.	160	.	.	.	.	.	.	.	.

	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A
Query Conservation
Alig confidence										.																																																									.	.
Template Conservation										.																																																									.	.
Template Sequence	I	P	V	L	I	D	E	A	H	.	G	A	H	F	G	L	Q	G	F	P	D	S	T	L	N	Y	Q	A	D	Y	V	V	Q	S	F	H	T	L	P	A	L	T	M	G	S	V	L	Y	I	H	K	N	A	P	Y	R	E	N	I	I	E	Y	L	S	Y	F	.	.	Q	T	S	S	P	S	Y	L	I	M	A	S
Template Known Secondary structure								T	T	.		T	T	T	T	S	T	T	S				G	G	G	G	T		S										S	S		T	T								T	T		T	T												.	.	S		S	S
Template Predicted Secondary structure										.																																																									.	.
Template SS confidence
	176	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.

	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	K	L	I	Y
Query Conservation																																																																												.
Alig confidence														.																											.	.	.	.																																.
Template Conservation														.																											.	.	.	.
Template Sequence	L	E	S	A	A	Q	F	Y	K	T	Y	D	S	.	T	L	F	F	A	K	R	A	Q	L	I	E	C	L	E	N	K	G	F	E	M	L	Q	V	D	D	.	.	.	.	P	L	K	L	L	I	K	Y	E	G	F	T	G	H	D	I	Q	N	W	F	M	N	A	H	I	Y	L	E	L	A	D	D	Y	Q	A	L
Template Known Secondary structure														.																		T							S	S	.	.	.	.	T	T							T	T	S												T	T				S				S	S
Template Predicted Secondary structure														.																											.	.	.	.
Template SS confidence
	254	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

	399	400	.	.	.	.	.	.	.	.	.			410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence	L	M	P	P	Y	I	I	L	P	Q	Q	.	.	L	Q	R	L	T	A	A	V	N	R
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence	A	I	L	P	L	W	H	H	D	D	T	Y	L	F	D	S	L	L	R	K	I	E	D
Template Known Secondary structure								T	T														T
Template Predicted Secondary structure
Template SS confidence
	329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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