Job Description P12995 Confidence 99.77% Date Thu Jan 5 11:33:14 GMT 2012 Rank 204 Aligned Residues 335 % Identity 12% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		56	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure						.	.																											.	.	.	.	.																	.
Query SS confidence						.	.																											.	.	.	.	.																	.
Query Sequence		I	H	G	Y	.	.	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	H	.	.	.	.	.	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	.	P	L	E	C	V	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W
Query Conservation						.	.																											.	.	.	.	.																	.
Alig confidence						.	.																											.	.	.	.	.																	.
Template Conservation
Template Sequence		C	I	A	H	L	H	T	P	P	L	X	P	A	V	A	A	E	A	X	I	A	A	L	N	Q	S	X	D	S	W	D	Q	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I
Template Known Secondary structure		B		S	S	S																						T	T		G	G	G																			T	T			T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
		128	.	130													.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	K	.	.	.	.	.	.	.	.	.	.	.	.	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Sequence		A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K	K	S	H	F	T	V	Q	K	S	A	S	W	X	G	L	G	E	K	.	.	.	.	.	.	.	.	.	.	A	V	X	T	V	D	A	N	A	D	G	T	X	.	.	.	.	.	.	D	I	T	K	L	D
Template Known Secondary structure															S		T	T	G	G	G							T	T	S		T									T	T	S		G	G	.	.	.	.	.	.	.	.	.	.	G						B		T	T	S		B	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template SS confidence
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.											.	690	.	.	.	.	.	.	.	.	.	700	.							.	.	.	.	.	.
		196	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		R	L	M	A	.	.	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G
Query Conservation						.	.
Alig confidence						.	.																									.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		E	V	I	A	Q	A	K	A	E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	.	.	.	.	L	D	F	I	A	D	X	A	V	K	H	D	X	W	X	H	V	D	G	A	Y	G	G	A	L	I	L	S	S	H	K	S	R	L	K	G	V	E	R	A	H	S	I	S	V	D
Template Known Secondary structure										T	T										B	S		T	T	T			B			.	.	.	.												T								T	T	G	G	G	G	G	G	S	T	T	G	G	G	G	T	T	G	G	G		S
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		708	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.					.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
		274	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		K	A	L	T	G	G	.	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D
Query Conservation								.
Alig confidence								.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	H	K	L	F	Y	Q	T	I	S	C	G	A	L	L	V	N	.	.	.	.	.	.	.	.	.	.	.	D	K	S	N	F	K	F	L	L	K	R	F	D	A	L	K	V	F	X	T	X	Q	N	V	G	P	K	A	L	G	D	X	Y	D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	D	Q
Template Known Secondary structure		T	T	S	T	T				S	S							S	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	G	G	G					T											T																									T		T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		784	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800												.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.						.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.						.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																								.	.	.	.	.																				.	.	.	.	.									.
Query SS confidence																								.	.	.	.	.																				.	.	.	.	.									.
Query Sequence		A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	.	.	.	.	.	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	.	.	.	.	.	G	K	L	I	Y	L	M	P	.	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V
Query Conservation																								.	.	.	.	.																				.	.	.	.	.									.
Alig confidence											.	.												.	.	.	.	.																				.	.	.	.	.									.
Template Conservation											.	.
Template Sequence		F	E	L	L	A	E	P	S	L	.	.	S	T	V	L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	A	L	R	L	E	A	L	T	R	G	I	A	V	L	G	E	T	I	V	D	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L	S	K	I	N	X	L	A
Template Known Secondary structure						S			S	S	.	.	S									S	S	S																	T	S		B							T	T											T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		877	.	.	880	.	.	.	.	.			.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.
		422	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		955	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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