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Job DescriptionP12995
Confidence99.87%DateThu Jan 5 11:33:14 GMT 2012
Rank140Aligned Residues320
% Identity13%Templatec2po3B_
PDB info PDB header:transferaseChain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.........100.........110.........120.........130.........140.
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Query Sequence  PQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFR
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Template Sequence  ARLYERLDRALDSQWL. . . . SNGGPLVREFEERVAGLA. . GVRHAVATCNATAGLQLLA. . . . . . . . HAAGLTGEVIMPS
Template Known Secondary structure  T

....SSS
..TSSS
........T

SS
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   2032.......2040....... ..2050.........2060..... ....2070.........2080.... .....2090.......
 
   142.......150.........160.........170.........180.........190.........200.........210.........220.
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Query Sequence  NGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMR
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Template Sequence  MTFAATPHALRWIGLTPVF. . . . . . . . . . . . . . . . . . . . . . ADIDPDTGNLDPDQVAAAVTPRTSAVVGVHLW. . . . GRP
Template Known Secondary structure  SS
TTT
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B
TTTSSB
STT

TT
GG....G

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   2098.2100.........2110...... ...2120.........2130.........2140........ .2150.
 
   222.......230.........240.........250.........260.........270.........280........ .290.........300
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Query Sequence  MYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLT. TREVAETISNGE
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Template Sequence  CA. . . . ADQLRKVADEHGLRLYFDAAH. ALGCAVD. GRPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALH
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TT.
TT
T.TTTSSSSS

TTSSS

SS
S
T
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   2152. ......2160.........2170.... .....2180. ........2190.........2200.........2210.........2220.....
 
   301........310.........320.........330.........340.........350.. .......360.........370..
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Query Sequence  . . . . . AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD. . . AEMVADVRVLGAIGVVETTH
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Template Sequence  NFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDE
Template Known Secondary structure  BTTTT
TT

TT


B
B

T
S
TT

GGGGSB





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   2226...2230.........2240.........2250.........2260.........2270.........2280.........2290.........2300.....
 
   373.. ....380.........390.. .......400.........410.........420...
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Query Sequence  PVN. . . MAALQKFFVEQGVWIRP. . . . . . . . . . . . . . . . . . . . . . . . . . FGKLIYLMPPYIILPQQLQRLTAAVNRAVQD
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Template Sequence  ATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATR
Template Known Secondary structure  SS
TT
B
TT
S
GGGSTTTTTS




TT

STT

S
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   2306...2310.........2320.........2330.........2340.........2350.........2360.........2370.........2380.....
 
   424...
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Query Sequence  ETFF
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Template Sequence  GREL
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   2386...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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