Job Description P12995 Confidence 99.87% Date Thu Jan 5 11:33:14 GMT 2012 Rank 140 Aligned Residues 320 % Identity 13% Template c2po3B_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product Resolution 2.10 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R
Query Conservation
Alig confidence																		.	.	.	.																			.	.																				.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.																			.	.																				.	.	.	.	.	.	.	.
Template Sequence		A	R	L	Y	E	R	L	D	R	A	L	D	S	Q	W	L	.	.	.	.	S	N	G	G	P	L	V	R	E	F	E	E	R	V	A	G	L	A	.	.	G	V	R	H	A	V	A	T	C	N	A	T	A	G	L	Q	L	L	A	.	.	.	.	.	.	.	.	H	A	A	G	L	T	G	E	V	I	M	P	S
Template Known Secondary structure															T			.	.	.	.	S	S	S																.	.	T	S	S						S											.	.	.	.	.	.	.	.				T			S						S
Template Predicted Secondary structure																		.	.	.	.																			.	.																				.	.	.	.	.	.	.	.
Template SS confidence
		2032	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.					.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.			.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.									.	.	.	.	.	2090	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template Sequence		M	T	F	A	A	T	P	H	A	L	R	W	I	G	L	T	P	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	I	D	P	D	T	G	N	L	D	P	D	Q	V	A	A	A	V	T	P	R	T	S	A	V	V	G	V	H	L	W	.	.	.	.	G	R	P
Template Known Secondary structure		S	S		T									T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B		T	T	T	S	S	B		S	T	T							T	T									G	G	.	.	.	.	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.
Template SS confidence
		2098	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.																							.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.					.	2150	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	.	T	R	E	V	A	E	T	I	S	N	G	E
Query Conservation																																																																					.
Alig confidence				.	.	.	.																						.								.																																.
Template Conservation				.	.	.	.																						.								.
Template Sequence		C	A	.	.	.	.	A	D	Q	L	R	K	V	A	D	E	H	G	L	R	L	Y	F	D	A	A	H	.	A	L	G	C	A	V	D	.	G	R	P	A	G	S	L	G	D	A	E	V	F	S	F	H	A	T	K	A	V	N	A	F	E	G	G	A	V	V	T	D	D	A	D	L	A	A	R	I	R	A	L	H
Template Known Secondary structure				.	.	.	.												T								T	T	.		T	T				T	.	T			T	T	S	S	S	S	S							T	T	S	S	S			S	S							S												T
Template Predicted Secondary structure				.	.	.	.																						.								.
Template SS confidence
		2152	.					.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.	.	2170	.	.	.	.		.	.	.	.	.	2180	.		.	.	.	.	.	.	.	.	2190	.	.	.	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.	.	2220	.	.	.	.	.
							301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure		.	.	.	.	.																																																					.	.	.
Query SS confidence		.	.	.	.	.																																																					.	.	.
Query Sequence		.	.	.	.	.	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	.	.	.	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H
Query Conservation		.	.	.	.	.																																																					.	.	.
Alig confidence		.	.	.	.	.																																																					.	.	.
Template Conservation
Template Sequence		N	F	G	F	D	L	P	G	G	S	P	A	G	G	T	N	A	K	M	S	E	A	A	A	A	M	G	L	T	S	L	D	A	F	P	E	V	I	D	R	N	R	R	N	H	A	A	Y	R	E	H	L	A	D	L	P	G	V	L	V	A	D	H	D	R	H	G	L	N	N	H	Q	Y	V	I	V	E	I	D	E
Template Known Secondary structure		B	T	T	T	T		T	T			T	T				B		B																																		T		S		T	T						G	G	G	G	S	B
Template Predicted Secondary structure
Template SS confidence
		2226	.	.	.	2230	.	.	.	.	.	.	.	.	.	2240	.	.	.	.	.	.	.	.	.	2250	.	.	.	.	.	.	.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.	.	.
		373	.	.				.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.																											.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure					.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	N	.	.	.	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V	Q	D
Query Conservation					.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	T	G	I	H	R	D	L	V	M	E	V	L	K	A	E	G	V	H	T	R	A	Y	F	S	P	G	C	H	E	L	E	P	Y	R	G	Q	P	H	A	P	L	P	H	T	E	R	L	A	A	R	V	L	S	L	P	T	G	T	A	I	G	D	D	D	I	R	R	V	A	D	L	L	R	L	C	A	T	R
Template Known Secondary structure					S	S												T	T				B		T	T		S		G	G	G	S	T	T	T	T	T	S													T	T							S	T	T																			S
Template Predicted Secondary structure
Template SS confidence
		2306	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370	.	.	.	.	.	.	.	.	.	2380	.	.	.	.	.
		424	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	F	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		2386	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions