Job Description P12995 Confidence 99.91% Date Thu Jan 5 11:33:14 GMT 2012 Rank 98 Aligned Residues 348 % Identity 11% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

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		56	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure						.	.																.																										.	.	.	.	.	.
Query SS confidence						.	.																.																										.	.	.	.	.	.
Query Sequence		I	H	G	Y	.	.	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	.	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	.	.	.	.	.	.	P	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y
Query Conservation						.	.																.																										.	.	.	.	.	.
Alig confidence						.	.																.																										.	.	.	.	.	.
Template Conservation
Template Sequence		Y	F	N	Q	L	S	T	G	L	D	M	V	G	L	A	A	D	W	L	T	S	T	A	N	T	N	M	F	T	Y	E	I	A	P	V	F	V	L	L	E	Y	V	T	L	K	K	M	R	E	I	I	G	W	P	G	G	S	G	D	G	I	F	S	P	G	G	A	I	S	N	M	Y	A	M	M	I	A	R	F	K
Template Known Secondary structure				S	S	S	S																					S	S		T	T	T																				T		G	G	G		S						S	S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		127					.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.							.	.																																																																			.
Query SS confidence			.	.	.	.							.	.																																																																			.
Query Sequence		W	.	.	.	.	Q	A	K	G	E	A	.	.	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M	A	.
Query Conservation			.	.	.	.							.	.																																																																			.
Alig confidence			.	.	.	.							.	.																												.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.											.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Sequence		M	F	P	E	V	K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S	L	K	K	G	A	A	A	L	G	I	G	T	D	.	.	.	.	.	.	.	.	.	.	S	V	I	L	I	K	C	D	E	R	G	K	M	.	.	.	.	.	.	I	P	S	D	L	E	R	R	I	L	E
Template Known Secondary structure				T	T						G	G	G	S									T	T	S		T									T	T	S		G	G	.	.	.	.	.	.	.	.	.	.	G						B		T	T	S		B	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.											.	.	300	.	.	.	.	.	.	.	.	.	310							.	.	.	.	.	.	.	.	.	320	.
			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																																				.
Query SS confidence		.																																																																				.
Query Sequence		.	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	.	P	D	I	L	C	L	G	K	A	L	T
Query Conservation		.																																																																				.
Alig confidence		.																									.	.	.	.																																								.
Template Conservation																											.	.	.	.
Template Sequence		A	K	Q	K	G	F	V	P	F	L	V	S	A	T	A	G	T	T	V	Y	G	A	F	D	P	.	.	.	.	L	L	A	V	A	D	I	C	K	K	Y	K	I	W	M	H	V	D	A	A	W	G	G	G	L	L	M	S	R	K	H	K	W	K	L	S	G	V	E	R	A	N	S	V	T	W	N	P	H	M	M
Template Known Secondary structure					T	T										B	S		T	T	T			B			.	.	.	.												T								T	T	G	G	G	G	G	G		T	T	T	G	G	G	G	T	T	G	G	G		S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.					.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.						.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure														.																		.	.	.	.	.
Query SS confidence														.																		.	.	.	.	.
Query Sequence		G	G	T	M	T	L	S	A	T	L	T	T	.	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	.	.	.	.	.	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R
Query Conservation														.																		.	.	.	.	.
Alig confidence														.																		.	.	.	.	.
Template Conservation
Template Sequence		G	V	P	L	Q	C	S	A	L	L	V	R	E	E	G	L	M	Q	N	C	N	Q	M	H	D	L	S	Y	D	T	G	D	K	A	L	Q	C	G	R	H	V	D	V	F	K	L	W	L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I	K	N	R	E
Template Known Secondary structure				S	S								S	S	T	T											G	G	G			G	G	G	S	S		S	S																																								T	S	T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.														.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.							.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.								.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.								.
Query Sequence		D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	.	.	.	.	.	K	L	I	Y	L	M	P	.	P	Y	I	I	L	P	Q	Q	L	Q
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.								.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.								.
Template Conservation
Template Sequence		G	Y	E	M	V	F	D	G	K	P	Q	H	T	N	V	C	F	W	Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V	A	P	V	I	K	A	R	M	M	E	Y	G	T	T	M	V	S	Y	Q	P	L	G	D	K	V	N	F	F	R	M	V	I	S	N	P	A	A	T	H	Q	D	I	D
Template Known Secondary structure		T				S	S	S	S			S	S	S									T	T	T	T	T									T	T													T	S									T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	T	A	A	V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	I	E	E	I	E	R	L	G	Q	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		573	.	.	.	.	.	.	580	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions