Job Description P12995 Confidence 99.93% Date Thu Jan 5 11:33:14 GMT 2012 Rank 73 Aligned Residues 339 % Identity 14% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.
Predicted Secondary structure																																	.													.	.	.	.	.	.	.																						.
Query SS confidence																																	.													.	.	.	.	.	.	.																						.
Query Sequence		R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	.	A	M	S	H	V	M	F	G	G	I	T	H	.	.	.	.	.	.	.	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	.	F	L	A	D	S	G	S
Query Conservation																																	.													.	.	.	.	.	.	.																						.
Alig confidence											.	.					.	.	.														.													.	.	.	.	.	.	.															.	.						.
Template Conservation											.	.					.	.	.																																																.	.
Template Sequence		R	E	G	L	E	L	I	A	S	.	.	E	N	F	V	.	.	.	S	K	Q	V	R	E	A	V	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	A	R	Y	Y	G	G	C	E	V	I	D	R	V	E	S	L	A	I	E	R	A	K	A	L	F	.	.	G	A	A	W	A	N	V	Q	P	H	S	G	S
Template Known Secondary structure				S					T	T	.	.					.	.	.									T	S	G	G	G	G							T	T			S	S	S																					.	.	T		S							S	S
Template Predicted Secondary structure											.	.					.	.	.																																																.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.			.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	.	.	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M
Query Conservation																																	.	.
Alig confidence													.	.	.	.	.	.	.														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation													.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		Q	A	N	M	A	V	Y	M	A	L	M	.	.	.	.	.	.	.	E	P	G	D	T	L	M	G	M	D	L	A	A	G	G	H	L	T	H	G	S	R	V	N	F	S	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	K	V	V	S	Y	G	V	R	P	D	T	E	L	I	.	.	.	D	L
Template Known Secondary structure													.	.	.	.	.	.	.		T	T								G	G	G	T			G	G	G	T		T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.		S									T	T	T		S		.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.														.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150				.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C
Query Conservation
Alig confidence											.	.	.											.									.	.	.	.	.
Template Conservation											.	.	.											.									.	.	.	.	.
Template Sequence		E	E	V	R	R	L	A	L	E	.	.	.	H	R	P	K	V	I	V	A	G	A	.	S	A	Y	P	R	F	W	D	.	.	.	.	.	F	K	A	F	R	E	I	A	D	E	V	G	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	N	P	L	P	Y	A	H	V	V	T	S	T
Template Known Secondary structure											.	.	.				S							.	S	S			S				.	.	.	.	.												T								T	T	T						T	T	S	S				T	T	T		S
Template Predicted Secondary structure											.	.	.											.									.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R
Query Conservation
Alig confidence											.	.																																																																					.
Template Conservation											.	.																																																																					.
Template Sequence		T	H	K	T	L	R	G	P	R	.	.	G	G	L	I	L	S	N	D	P	E	L	G	K	R	I	D	K	L	I	F	P	G	I	Q	G	G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	Q	P	E	F	K	E	Y	S	R	L	V	V	E	N	A	K	R	L	A	E	E	L	A	R	R	.
Template Known Secondary structure		S	S	G	G	G				S	.	.							S													T	T	T	T		S	S																	T	S																							T	T	.
Template Predicted Secondary structure											.	.																																																																					.
Template SS confidence
		224	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.												.	.	.	.	.	400	.	.					.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query Sequence		D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	.	.	.	.	.	.	.	.	.	.	K	L	I	Y	L	M	P	P	.	.	.	.	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation
Template Sequence		G	Y	R	I	V	T	G	G	T	D	N	H	L	F	L	V	D	L	R	P	K	G	L	T	G	K	E	A	E	E	R	L	D	A	V	G	I	T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	S	G	I	R	I	G	T	P	A	I	T	T	R	G	F	T	P	E	E	M	P	L	V	A	E	L
Template Known Secondary structure		T				G	G	G	S		S	S	S							G	G	G	T												T	T	T									T	T			S		T	T	T		S												T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		417	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	R	A	L	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions