Job Description P41052 Confidence 100.00% Date Thu Jan 5 12:01:21 GMT 2012 Rank 1 Aligned Residues 312 % Identity 99% Template d1qusa_ SCOP info Lysozyme-like Lysozyme-like Bacterial muramidase, catalytic domain Resolution 1.70

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	E	P	Q	H	N	V	M	Q	M	G	G	D	F	A	N	N	P	N	A	Q	Q	F	I	D	K	M	V	N	K	H	G	F	D	R	Q	Q	L	Q	E	I	L	S	Q	A	K	R	L	D	S	V	L	R	L	M	D	N	Q	A	P	T	T	S	V	K	P	P	S	G	P	N	G	A	W	L	R	Y	R	K
Query Conservation
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		M	V	E	P	Q	H	N	V	M	Q	M	G	G	D	F	A	N	N	P	N	A	Q	Q	F	I	D	K	M	V	N	K	H	G	F	D	R	Q	Q	L	Q	E	I	L	S	Q	A	K	R	L	D	S	V	L	R	L	M	D	N	Q	G	P	N	.	.	.	.	.	.	.	.	.	.	G	A	W	L	R	Y	R	K
Template Known Secondary structure							T	T						S	T	T	T	T																											T	T																	S	.	.	.	.	.	.	.	.	.	.								T
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.											.	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	I	T	P	D	N	V	Q	N	G	V	V	F	W	N	Q	Y	E	D	A	L	N	R	A	W	Q	V	Y	G	V	P	P	E	I	I	V	G	I	I	G	V	E	T	R	W	G	R	V	M	G	K	T	R	I	L	D	A	L	A	T	L	S	F	N	Y	P	R	R	A	E	Y	F	S	G	E	L	E	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	I	T	P	D	N	V	Q	N	G	V	V	F	W	N	Q	Y	E	D	A	L	N	R	A	W	Q	V	Y	G	V	P	P	E	I	I	V	G	I	I	G	V	E	T	R	W	G	R	V	M	G	K	T	R	I	L	D	A	L	A	T	L	S	F	N	Y	P	R	R	A	E	Y	F	S	G	E	L	E	T	F
Template Known Secondary structure		T	T		S														T																											T	T	T	T																	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	M	A	R	D	E	Q	D	D	P	L	N	L	K	G	S	F	A	G	A	M	G	Y	G	Q	F	M	P	S	S	Y	K	Q	Y	A	V	D	F	S	G	D	G	H	I	N	L	W	D	P	V	D	A	I	G	S	V	A	N	Y	F	K	A	H	G	W	V	K	G	D	Q	V	A	V	M	A	N	G	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	M	A	R	D	E	Q	D	D	P	L	N	L	K	G	S	F	A	G	A	M	G	Y	G	Q	F	M	P	S	S	Y	K	Q	Y	A	V	D	F	S	G	D	G	H	I	N	L	W	D	P	V	D	A	I	G	S	V	A	N	Y	F	K	A	H	G	W	V	K	G	D	Q	V	A	V	M	A	N	G	Q	A
Template Known Secondary structure								T	T			G	G	G					T	T			B	T	T	T	T	B													S	S	S	S				T	T	S															T	T			T	T			S						S
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	P	N	G	F	K	T	K	Y	S	I	S	Q	L	A	A	A	G	L	T	P	Q	Q	P	L	G	N	H	Q	Q	A	S	L	L	R	L	D	V	G	T	G	Y	Q	Y	W	Y	G	L	P	N	F	Y	T	I	T	R	Y	N	H	S	T	H	Y	A	M	A	V	W	Q	L	G	Q	A	V	A	L	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	L	P	N	G	F	K	T	K	Y	S	I	S	Q	L	A	A	A	G	L	T	P	Q	Q	P	L	G	N	H	Q	Q	A	S	L	L	R	L	D	V	G	T	G	Y	Q	Y	W	Y	G	L	P	N	F	Y	T	I	T	R	Y	N	H	S	T	H	Y	A	M	A	V	W	Q	L	G	Q	A	V	A	L	A	R
Template Known Secondary structure		T	T	S																T	T				S	S			T	T												S	S	S															T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		360	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions