Return to main results Retrieve Phyre Job Id

Job DescriptionP41052
Confidence87.34%DateThu Jan 5 12:01:21 GMT 2012
Rank12Aligned Residues80
% Identity23%Templatec3bkhA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   138.140.........150.........160.........170.........180.........190.........200.........210.......
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  EDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSF
Query Conservation     
   
  



  

 

 



  
   
   
  





    

   
  

 
 
            
 

 
Alig confidence 



























................



............................



Template Conservation             
     
   
  


 ................
  
............................    
Template Sequence  TPVXNAVENATGVRSQLLLTFASIESAF. . . . . . . . . . . . . . . . DYEI. . . . . . . . . . . . . . . . . . . . . . . . . . . . KAKT
Template Known Secondary structure 


TT................
SS
............................B
TT
Template Predicted Secondary structure 







................



............................



Template SS confidence 















































































   91........100.........110........ .120.. ....
 
   218.220.........230. ........240....... ..250.........260...
Predicted Secondary structure 









........













.

Query SS confidence 













. . . . . . . .















.















Query Sequence  AGAMGYGQFMPSSY. . . . . . . . KQYAVDFSGDGHINLW. DPVDAIGSVANYFKAH
Query Conservation 




  





 ........  



 



  

 .   

  
 



   
Alig confidence 













........




..








.















Template Conservation 


 

 


  


          
 ..     



 

  
  
       
Template Sequence  SSATGWFQFLTGTWKTXIENYGXKYGV. . LTDPTGALRKDPRISALXGAELIKEN
Template Known Secondary structure  SS
BTTTTB
GGGGT
..


TT
GGGG
Template Predicted Secondary structure 













..



Template SS confidence 






















































   127..130.........140.........150... ......160.........170.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions