Job Description P77258 Confidence 99.64% Date Thu Jan 5 12:26:56 GMT 2012 Rank 29 Aligned Residues 248 % Identity 15% Template d1d3ga_ SCOP info TIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases Resolution 1.60

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.																	.	.	.	.	.	.	.	.
Query SS confidence																																																									.																	.	.	.	.	.	.	.	.
Query Sequence		P	L	K	V	G	A	I	T	A	A	N	R	I	F	M	A	P	L	T	R	L	R	S	I	E	P	G	D	I	P	T	P	L	M	A	E	Y	Y	R	Q	R	A	S	A	G	L	I	I	S	E	A	T	Q	I	S	.	A	Q	A	K	G	Y	A	G	A	P	G	I	H	S	P	E	.	.	.	.	.	.	.	.
Query Conservation																																																									.																	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.																													.																	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	R	V	L	G	H	K	F	R	N	P	V	G	I	A	A	.	.	.	.	.	.	.	.	.	.	G	F	D	K	H	G	E	A	V	D	G	L	Y	K	M	G	F	G	F	V	E	I	G	S	V	T	P	K	P	Q	E	G	N	P	R	P	R	V	F	R	L	P	E	D	Q	A	V	I	N	R	Y	G	F
Template Known Secondary structure						T	T				S	S	S					T	.	.	.	.	.	.	.	.	.	.	T	S	S	T	T	S	S	S								T		S									S	S		B			S		S							G	G	G	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.											.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
												80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	Q	I	A	A	W	K	K	I	T	A	G	V	H	A	E	N	G	H	M	A	V	Q	L	W	H	T	G	R	I	S	H	A	S	L	Q	P	G	G	Q	A	P	V	A	P	S	A	L	S	A	G	T	R	T	S	L	R	D	E	N	G	Q	A	I	R	V	E	T	S	M	P
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	S	H	G	L	S	V	V	E	H	R	L	R	A	R	Q	Q	K	Q	A	K	L	T	E	D	G	L	P	L	G	V	N	L	G	K	N	K	T	S	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			B												T	T										T	T											T	T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	L	E	L	E	E	I	P	G	I	V	N	D	F	R	Q	A	I	A	N	A	R	E	A	G	F	D	L	V	E	L	H	S	A	H	G	Y	L	L	H	Q	F	L	S	P	S	S	N	H	R	T	D	Q	Y	G	G	S	V	E	N	R	A	R	L	V	L	E	V	V	D	A	G	I	E	E	W	G	A	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.													.													.	.	.	.	.	.	.	.	.					.	.	.																											.
Template Conservation		.	.	.	.	.	.	.	.	.	.													.													.	.	.	.	.	.	.	.	.					.	.	.																											.
Template Sequence		.	.	.	.	.	.	.	.	.	.	A	A	E	D	Y	A	E	G	V	R	V	L	.	G	P	L	A	D	Y	L	V	V	N	V	S	.	.	.	.	.	.	.	.	.	S	P	N	T	.	.	.	A	G	L	G	K	A	E	L	R	R	L	L	T	K	V	L	Q	E	R	D	G	L	R	R	V	H	.	R	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.													.	G	G	G		S						S		.	.	.	.	.	.	.	.	.		T	T	S	.	.	.	T	T																			T	S		G	G	G	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.													.													.	.	.	.	.	.	.	.	.					.	.	.																											.
Template SS confidence
												191	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.										.	.	.	.				.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.																		.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		R	I	G	I	R	V	S	P	I	G	T	F	Q	N	T	D	N	G	P	N	E	E	A	D	A	L	Y	L	I	E	Q	L	G	K	R	G	I	A	Y	L	H	M	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	D	W	A	G	G	E	.	.	P	Y	T	D	A	F	R	E	K	V
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	L	V	K	I	A	.	.	.	.	.	.	.	.	.	.	P	D	L	T	S	Q	D	K	E	D	I	A	S	V	V	K	E	L	G	I	D	G	L	I	V	T	N	T	T	V	S	R	P	A	G	L	Q	G	A	L	R	S	E	T	G	G	L	S	G	K	P	L	R	D	L	S	T	Q	T	I	R	E	M
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	S																		T										B	S				T	T				T	T	T	T	S	S	S					G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.											.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		291	.	.	.			.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure						.	.											.																									.
Query SS confidence						.	.											.																									.
Query Sequence		R	A	R	F	.	.	H	G	P	I	I	G	A	G	A	Y	.	T	V	E	K	A	E	T	L	I	G	K	G	L	I	D	A	V	A	F	G	R	D	W	I	.	A	N	P	D	L	V	A	R	L	Q	R	K
Query Conservation						.	.											.																									.
Alig confidence						.	.											.													.												.
Template Conservation																															.
Template Sequence		Y	A	L	T	Q	G	R	V	P	I	I	G	V	G	G	V	S	S	G	Q	D	A	L	E	K	I	R	A	G	.	A	S	L	V	Q	L	Y	T	A	L	T	F	W	G	P	P	V	V	G	K	V	K	R	E
Template Known Secondary structure					T	T	T		S						S	S			S											T	.		S					S								T
Template Predicted Secondary structure																															.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions