Job Description P77258 Confidence 100.00% Date Thu Jan 5 12:26:56 GMT 2012 Rank 16 Aligned Residues 339 % Identity 25% Template c3l5aA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.																																								.
Query SS confidence														.																																								.
Query Sequence		S	S	E	K	L	Y	S	P	L	K	V	G	.	A	I	T	A	A	N	R	I	F	M	A	P	L	T	R	L	R	S	I	E	P	G	D	I	P	T	P	L	M	A	E	Y	Y	R	Q	R	A	S	A	.	G	L	I	I	S	E	A	T	Q	I	S	A	Q	A	K	G	Y	A	G	A	P	G	I	H	S	P	E
Query Conservation														.																																								.
Alig confidence														.																								.																.
Template Conservation																																						.
Template Sequence		R	Y	K	P	L	L	Q	S	I	H	L	P	N	G	I	K	I	S	N	R	F	V	L	S	P	X	T	V	N	A	S	T	K	E	G	Y	.	I	T	K	A	D	L	A	Y	A	A	R	R	S	N	S	A	G	X	Q	V	T	G	A	A	Y	I	E	P	Y	G	K	L	F	E	Y	G	F	N	I	D	H	D	A
Template Known Secondary structure		T	T	G	G	G	G	S					T	T	S				S	S	S											S		T	T			.												T	T	T	S		S									S	S	G	G	G			S	T	T					S	S	G	G
Template Predicted Secondary structure																																						.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	A	A	W	K	K	I	T	A	G	V	H	A	E	N	G	H	M	A	V	Q	L	W	H	T	G	R	I	S	H	A	S	L	Q	P	G	G	Q	A	P	V	A	P	S	A	L	S	A	G	T	R	T	S	L	R	D	E	N	G	Q	A	I	R	V	E	T	S	M	P	R	A	L	E	L	E	E	I	P	G
Query Conservation
Alig confidence																																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	I	P	G	L	T	N	X	A	S	T	X	K	Q	H	G	S	L	A	I	I	Q	L	A	H	A	G	R	F	S	N	Q	A	I	L	.	N	F	G	K	V	Y	G	P	S	P	X	T	L	H	S	P	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	V	I	A	X	S	H	E	K	I	N	S
Template Known Secondary structure		G													T	T	S											G	G	G							.			S					S	S						S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.														.	.	.	.	.	140	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230						.	.	.
Predicted Secondary structure																																																	.																									.	.	.	.	.
Query SS confidence																																																	.																									.	.	.	.	.
Query Sequence		I	V	N	D	F	R	Q	A	I	A	N	A	R	E	A	G	F	D	L	V	E	L	H	S	A	H	G	Y	L	L	H	Q	F	L	S	P	S	S	N	H	R	T	D	Q	Y	G	G	.	S	V	E	N	R	A	R	L	V	L	E	V	V	D	A	G	I	E	E	W	G	A	D	R	.	.	.	.	.	I	G	I
Query Conservation																																																	.																									.	.	.	.	.
Alig confidence																																																	.																									.	.	.	.	.
Template Conservation
Template Sequence		I	I	Q	Q	Y	R	D	A	T	L	R	A	I	K	A	G	F	D	G	V	E	I	S	I	A	Q	R	L	L	I	Q	T	F	F	S	T	F	S	N	R	R	T	D	H	Y	G	A	D	S	L	K	N	R	A	R	L	C	L	E	V	X	R	A	V	Q	E	V	I	D	K	E	A	P	D	N	F	I	L	G	F
Template Known Secondary structure																T	T		S								T	T	S								T	T	T					S	T	T	S	T	T																										T	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.											280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																														.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	S	P	I	G	T	F	Q	N	T	D	N	G	P	N	E	E	A	D	A	L	Y	L	I	E	Q	L	.	G	K	R	G	I	A	Y	L	H	M	S	E	P	D	W	A	G	G	.	.	.	.	.	.	.	.	.	.	E	P	Y	T	D	A	F	R	E	K	V	R	A	R	F	H	G	P	I	I	G	A	G
Query Conservation																														.																			.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																			.																			.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		R	A	T	P	E	E	T	R	.	.	G	S	D	L	G	Y	T	I	D	E	F	N	Q	L	I	D	W	V	X	D	V	S	N	I	Q	Y	L	A	I	A	S	W	G	R	H	I	Y	Q	N	T	S	R	T	P	G	D	H	F	G	R	P	V	N	Q	I	V	Y	E	H	L	A	G	R	I	P	L	I	A	S	G
Template Known Secondary structure					S					.	.	T	T																				S										T	T			G	G	G		B				S	S	T	T	T	T	S	B										T	T	S	S						S
Template Predicted Secondary structure										.	.
Template SS confidence
		228	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		303	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.																																						.	.
Query SS confidence				.																																						.	.
Query Sequence		A	Y	.	T	V	E	K	A	E	T	L	I	G	K	G	L	I	D	A	V	A	F	G	R	D	W	I	A	N	P	D	L	V	A	R	L	Q	R	K	A	.	.	E	L	N	P	Q	R	A	E	S	F	Y	G	G	G	A	E	G	Y
Query Conservation				.																																						.	.
Alig confidence				.												.	.																									.	.
Template Conservation																.	.
Template Sequence		G	I	N	S	P	E	S	A	L	D	A	L	Q	H	.	.	A	D	X	V	G	X	S	S	P	F	V	T	E	P	D	F	V	H	K	L	A	E	Q	R	P	H	D	I	N	L	E	F	S	X	A	D	L	E	D	L	A	I	P	H
Template Known Secondary structure		S			S								G	G	G	.	.		S					S	T						T	T							T	T		G	G	G							G	G	G	T	T	T	T	T
Template Predicted Secondary structure																.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions