Job Description P77258 Confidence 96.13% Date Thu Jan 5 12:26:56 GMT 2012 Rank 294 Aligned Residues 164 % Identity 21% Template c3chvA_ PDB info PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution Resolution 1.45 Å

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		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	E	L	E	E	I	P	G	I	V	N	D	F	R	Q	A	I	A	N	A	R	E	A	G	F	D	L	V	E	L	H	S	A	H	G	Y	L	L	H	Q	F	L	S	P	S	S	N	H	R	T	D	Q	Y	G	G	S	V	E	N	R	A	R	L	V	L	E	V	V	D	A	G	I	E	E	W	G	A	D	R
Query Conservation
Alig confidence									.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template Conservation									.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template Sequence		P	I	T	V	S	E	Q	.	.	.	.	.	.	.	V	E	S	T	Q	E	A	F	E	A	G	A	A	I	A	H	C	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	N	D	.	.	D	G	T	P	S	S	D	P	D	R	F	A	R	L	T	E	G	L	H	T	H	C	P	G	X	I
Template Known Secondary structure				S					.	.	.	.	.	.	.											T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	.	.	T	S																				S	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template SS confidence
		29	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.																								.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	I	R	V	S	P	I	G	T	F	Q	N	T	D	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	E	E	A	D	A	L	Y	L	I	E	Q	L	G	K	R	G	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Q	F	S	T	G	G	R	S	G	A	G	Q	A	R	G	G	X	L	P	L	K	P	D	X	A	S	L	S	V	G	S	N	N	F	P	S	R	V	Y	E	N	P	P	D	L	V	D	W	L	A	A	Q	X	R	S	Y	R	V	T	P	E	I	E	A	F	D	L	S	H	I	L	R	A	I	D	X	H	G	R
Template Known Secondary structure								T	T	T			G	G	G	G	G	T	T	G	G	G			S							S					S	S	S																				T								S	S													T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
									268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.							.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.							.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																															.	.	.	.	.	.																												.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																															.	.	.	.	.	.																												.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	Y	L	H	M	S	E	P	D	W	A	G	G	E	P	Y	T	D	A	F	R	E	K	V	R	A	R	F	H	G	P	.	.	.	.	.	.	I	I	G	A	G	A	Y	T	V	E	K	A	E	T	L	I	G	K	G	L	I	D	A	V	A	F	G	.	.	.	.	.	.	R	D	W	I
Query Conservation		.	.	.	.	.	.	.																															.	.	.	.	.	.																												.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																															.	.	.	.	.	.																												.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	L	Y	G	K	L	Y	V	Q	F	V	X	G	V	K	N	A	X	P	A	D	R	E	V	F	D	F	Y	V	R	X	X	R	T	R	A	P	Q	A	E	W	C	A	A	G	I	G	A	N	Q	L	T	V	N	E	W	A	I	A	A	G	G	H	T	R	T	G	L	E	D	N	I	R	L	D	R	Q	T	L
Template Known Secondary structure		T		S		S	S										T	T	S																				T	T	S								T	T												T	T						S	T	T	T			B	S	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		329			330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		A	.	.	N	P	D	L	V	A	R	L	Q	R
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		A	P	S	N	A	A	L	V	R	R	S	V	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions