Job Description P77258 Confidence 99.59% Date Thu Jan 5 12:26:56 GMT 2012 Rank 30 Aligned Residues 251 % Identity 16% Template c2fptA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial; PDBTitle: dual binding mode of a novel series of dhodh inhibitors Resolution 2.40 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.																.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.																.	.	.	.	.	.	.	.	.
Query Sequence		P	L	K	V	G	A	I	T	A	A	N	R	I	F	M	A	P	L	T	R	L	R	S	I	E	P	G	D	I	P	T	P	L	M	A	E	Y	Y	R	Q	R	A	S	A	G	L	I	I	S	E	A	T	Q	I	S	.	A	Q	A	K	G	Y	A	G	A	P	G	I	H	S	P	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.																.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.																													.																.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	R	V	L	G	H	K	F	R	N	P	V	G	I	A	A	.	.	.	.	.	.	.	.	.	.	G	F	D	K	H	G	E	A	V	D	G	L	Y	K	M	G	F	G	F	V	E	I	G	S	V	T	P	K	P	Q	E	G	N	P	R	P	R	V	F	R	L	P	E	D	Q	A	V	I	N	R	Y	G	F
Template Known Secondary structure						T	T				S	S	S					T	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	S	S								T	T		S									S	S		B			S		S							G	G	G	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.											.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
											79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	E	Q	I	A	A	W	K	K	I	T	A	G	V	H	A	E	N	G	H	M	A	V	Q	L	W	H	T	G	R	I	S	H	A	S	L	Q	P	G	G	Q	A	P	V	A	P	S	A	L	S	A	G	T	R	T	S	L	R	D	E	N	G	Q	A	I	R	V	E	T	S	M	P
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	S	H	G	L	S	V	V	E	H	R	L	R	A	R	Q	Q	K	Q	A	K	L	T	E	D	G	L	P	L	G	V	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K
Template Known Secondary structure			B												T	T										T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.																																														.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		R	A	L	E	L	E	E	I	P	G	I	V	N	D	F	R	Q	A	I	A	N	A	R	E	A	G	F	D	L	V	E	L	H	S	A	H	G	Y	L	L	H	Q	F	L	S	P	.	S	S	N	H	R	T	D	Q	Y	G	G	S	V	E	N	R	A	R	L	V	L	E	V	V	D	A	G	I	E	E	W	G	A
Query Conservation																																																.
Alig confidence																				.	.	.	.	.													.	.	.	.	.	.	.	.	.			.																																.
Template Conservation																				.	.	.	.	.													.	.	.	.	.	.	.	.	.																																			.
Template Sequence		N	K	T	S	V	D	A	A	E	D	Y	A	E	G	V	R	V	L	.	.	.	.	.	G	P	L	A	D	Y	L	V	V	N	V	S	.	.	.	.	.	.	.	.	.	S	P	N	T	A	G	L	R	S	L	Q	G	K	A	E	L	R	R	L	L	T	K	V	L	Q	E	R	D	G	L	R	R	V	H	.	R
Template Known Secondary structure			T	T		S														.	.	.	.	.	G	G	G		S								.	.	.	.	.	.	.	.	.		T	T	S	T	T	S	G	G	G	G	S																	T	S		G	G	G	.
Template Predicted Secondary structure																				.	.	.	.	.													.	.	.	.	.	.	.	.	.																																			.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.						.	.	.	.	.	.	.	210	.	.	.	.										.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																				.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	I	G	I	R	V	S	P	I	G	T	F	Q	N	T	D	N	G	P	N	E	E	A	D	A	L	Y	L	I	E	Q	L	G	K	R	G	I	A	Y	L	H	M	S	E	P	D	W	A	G	G	E	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	A	F	R	E	K
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	V	L	V	K	I	A	P	.	.	.	.	.	.	.	.	.	.	D	L	T	S	Q	D	K	E	D	I	A	S	V	V	K	E	L	G	I	D	G	L	I	V	T	N	T	T	V	S	R	P	A	G	L	Q	G	A	L	R	S	E	T	G	G	L	S	G	K	P	L	R	D	L	S	T	Q	T	I	R	E
Template Known Secondary structure										S	.	.	.	.	.	.	.	.	.	.																		T										B	S				T	T				T	T	T	T	S	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.											.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		290	.	.	.	.			.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure							.	.											.																									.
Query SS confidence							.	.											.																									.
Query Sequence		V	R	A	R	F	.	.	H	G	P	I	I	G	A	G	A	Y	.	T	V	E	K	A	E	T	L	I	G	K	G	L	I	D	A	V	A	F	G	R	D	W	I	.	A	N	P	D	L	V	A	R	L	Q	R	K
Query Conservation							.	.											.																									.
Alig confidence							.	.											.													.												.
Template Conservation																																.
Template Sequence		M	Y	A	L	T	Q	G	R	V	P	I	I	G	V	G	G	V	S	S	G	Q	D	A	L	E	K	I	R	A	G	.	A	S	L	V	Q	L	Y	T	A	L	T	F	W	G	P	P	V	V	G	K	V	K	R	E
Template Known Secondary structure						T	T	T		S						S	S			S											T	.		S					S								T
Template Predicted Secondary structure																																.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions