Job Description P77258 Confidence 99.46% Date Thu Jan 5 12:26:56 GMT 2012 Rank 32 Aligned Residues 250 % Identity 15% Template c1tv5A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase homolog, mitochondrial; PDBTitle: plasmodium falciparum dihydroorotate dehydrogenase with a bound2 inhibitor Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																									.																			.	.	.	.	.	.
Query SS confidence																																																									.																			.	.	.	.	.	.
Query Sequence		P	L	K	V	G	A	I	T	A	A	N	R	I	F	M	A	P	L	T	R	L	R	S	I	E	P	G	D	I	P	T	P	L	M	A	E	Y	Y	R	Q	R	A	S	A	G	L	I	I	S	E	A	T	Q	I	S	.	A	Q	A	K	G	Y	A	G	A	P	G	I	H	S	P	E	Q	I	.	.	.	.	.	.
Query Conservation																																																									.																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.																													.																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.
Template Sequence		C	T	N	I	K	H	L	D	F	I	N	P	F	G	V	A	A	.	.	.	.	.	.	.	.	.	.	G	F	D	K	N	G	V	C	I	D	S	I	L	K	L	G	F	S	F	I	E	I	G	T	I	T	P	R	G	Q	T	G	N	A	K	P	R	I	F	R	D	V	E	S	R	S	I	I	N	S	C	G	F
Template Known Secondary structure						T	T				S	S	S					T	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T		S	S						T	T	T		S									S	S		B			S		S							T	T	T	T								S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.											.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
															82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	W	K	K	I	T	A	G	V	H	A	E	N	G	H	M	A	V	Q	L	W	H	T	G	R	I	S	H	A	S	L	Q	P	G	G	Q	A	P	V	A	P	S	A	L	S	A	G	T	R	T	S	L	R	D	E	N	G	Q	A	I	R	V	E	T	S	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	N	M	G	C	D	K	V	T	E	N	L	I	L	F	R	K	R	Q	E	E	D	K	L	L	S	K	H	I	V	G	V	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	N	K	D	T	V	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			B	S																				S	T	T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T		S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.															.	.	.	.	.	.	.	320	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	A	L	E	L	E	E	I	P	G	I	V	N	D	F	R	Q	A	I	A	N	A	R	E	A	G	F	D	L	V	E	L	H	S	A	H	G	Y	L	L	H	Q	F	L	S	P	S	S	N	H	R	T	D	Q	Y	G	G	S	V	E	N	R	A	R	L	V	L	E	V	V	D	A	G	I	E	E	W	G	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.															.										.	.	.	.	.	.	.	.	.			.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.															.										.	.	.	.	.	.	.	.	.			.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	V	D	D	L	K	Y	C	I	N	K	I	G	R	Y	.	A	D	Y	I	A	I	N	V	S	.	.	.	.	.	.	.	.	.	S	P	.	.	N	T	P	G	L	R	D	N	Q	E	A	G	K	L	K	N	I	I	L	S	V	K	E	E	I	D	N	L	E	F	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.												G	G	G	.		S								.	.	.	.	.	.	.	.	.		T	.	.	T	S	T	T	G	G	G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.															.										.	.	.	.	.	.	.	.	.			.	.
Template SS confidence
														322	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.										.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		229									230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.									.	.	.	.	.	.	280	.	.										.
Predicted Secondary structure			.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Query Sequence		D	.	.	.	.	.	.	.	.	R	I	G	I	R	V	S	P	I	G	T	F	Q	N	T	D	N	G	P	N	E	E	A	D	A	L	Y	L	I	E	Q	L	G	K	R	G	I	A	Y	L	H	M	S	E	.	.	.	.	.	.	.	.	P	D	W	A	G	G	E	P	Y	.	.	.	.	.	.	.	.	.	T
Query Conservation			.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.
Template Sequence		W	F	N	T	T	K	K	K	P	L	V	F	V	K	L	A	P	D	.	.	.	.	.	.	.	.	.	.	L	N	Q	E	Q	K	K	E	I	A	D	V	L	L	E	T	N	I	D	G	M	I	I	S	N	T	T	T	Q	I	N	D	I	K	S	F	E	N	K	K	G	G	V	S	G	A	K	L	K	D	I	S
Template Known Secondary structure				S	S	S	S	S										S		.	.	.	.	.	.	.	.	.	.																T	T		S								B	S						G	G	G	T	T			S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.											.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure														.	.										.																											.
Query SS confidence														.	.										.																											.
Query Sequence		D	A	F	R	E	K	V	R	A	R	F	H	.	.	G	P	I	I	G	A	G	A	Y	.	T	V	E	K	A	E	T	L	I	G	K	G	L	I	D	A	V	A	F	G	R	D	W	I	A	N	.	P	D	L	V	A	R	L	Q	R	K
Query Conservation														.	.										.																											.
Alig confidence														.	.										.													.														.
Template Conservation																																						.
Template Sequence		T	K	F	I	C	E	M	Y	N	Y	T	N	K	Q	I	P	I	I	A	S	G	G	I	F	S	G	L	D	A	L	E	K	I	E	A	G	.	A	S	V	C	Q	L	Y	S	C	L	V	F	N	G	M	K	S	A	V	Q	I	K	R	E
Template Known Secondary structure												T	T	T		S						S	S			S										T	T	.							S							G	G	G
Template Predicted Secondary structure																																						.
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions