Job Description P0AEP3 Confidence 99.97% Date Thu Jan 5 11:23:50 GMT 2012 Rank 32 Aligned Residues 227 % Identity 14% Template d1vica_ SCOP info Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Cytidylytransferase Resolution 1.80

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	I	P	V	A	G	L	G	T	R	M	L	P	A	T	K	A	I	P	K	E	M	L	P	L	V	D	K	P	L	I	Q	Y	V	V	N	E	C	I	A	A	G	I	T	E	I	V	L	V	T	H	S	S	K	N	S	I	E	N	H	F	D	T	S	F	E	L	E	A	M	L	E	K	R	V	K	R	Q
Query Conservation
Alig confidence																	.	.	.	.	.	.																																		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.																																		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	I	I	P	A	R	F	A	S	S	R	L	P	G	.	.	.	.	.	.	K	P	L	A	D	I	K	G	K	P	M	I	Q	H	V	F	E	K	A	L	Q	S	G	A	S	R	V	I	I	A	T	D	N	.	.	E	N	V	A	D	V	A	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												S	S	S	T	T	.	.	.	.	.	.	G	G	G				T	T														T	T		S							S		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.																																		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.
Predicted Secondary structure																																							.	.																																		.
Query SS confidence																																							.	.																																		.
Query Sequence		L	L	D	E	V	Q	S	I	C	P	P	H	V	T	I	M	Q	V	R	Q	G	L	A	K	G	L	G	H	A	V	L	C	A	H	P	V	V	.	.	G	D	E	P	V	A	V	I	L	P	D	V	I	L	D	E	Y	E	S	D	L	S	Q	D	N	L	A	E	M	I	R	R	F	.	D	E	T	G	H	S	Q
Query Conservation																																							.	.																																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.																												.	.																	.	.	.	.	.	.												.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	F	G	A	E	V	C	M	T	S	V	N	H	N	S	G	T	E	R	L	A	E	V	V	E	K	L	A	I	P	D	N	E	I	I	V	N	I	Q	G	D	E	P	L	I	P	.	.	.	.	.	.	P	V	I	V	R	Q	V	A	D	N	L	A	K	F	N	V	N	M	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	T	T									S	S														T	T			T	T								T	T		T	T			.	.	.	.	.	.															T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.
Template SS confidence
												61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.																.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	M	V	E	P	V	A	D	V	T	A	Y	G	.	.	.	.	.	V	V	D	C	K	G	V	E	L	A	P	G	E	S	V	P	M	V	G	V	V	E	K	P	K	A	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	S	N	L	A	I	V	G	R	Y	V	L	S	A	D	I	W	P
Query Conservation															.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.									.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		S	L	A	V	K	I	H	D	A	E	E	L	F	N	P	N	A	V	K	V	L	T	D	K	D	G	.	.	.	.	.	.	.	Y	V	L	Y	F	S	R	S	V	I	P	Y	D	R	D	Q	F	M	N	L	Q	D	V	Q	K	V	Q	L	S	D	A	Y	L	R	H	I	G	I	Y	A	Y	R	A	G	F	I	K
Template Known Secondary structure														T		T	T	S							T	T	S	.	.	.	.	.	.	.	B						S	S		S	S							T	T		S		G	G	G					T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		L	L	A	K	T	P	P	G	A	G	D	E	I	Q	L	T	D	A	I	D	M	L	I	E	K	E	T	V	E	A	Y	H	M	K	G	K	.	S	H	D	C	G	N	K	L	G	Y	M	Q	A	F	V	E	Y	G	I	R
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		Q	Y	V	Q	W	A	P	T	Q	L	E	N	L	E	K	L	E	Q	L	R	V	L	Y	N	G	E	R	I	H	V	E	L	A	K	E	V	P	A	V	G	V	D	T	A	E	D	L	E	K	V	R	A	I	L	A	A	N
Template Known Secondary structure						S										T		T	T						T	T									S	S								S														T
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions