Job Description P0AEP3 Confidence 99.56% Date Thu Jan 5 11:23:50 GMT 2012 Rank 60 Aligned Residues 189 % Identity 19% Template c3okrC_ PDB info PDB header:transferase Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) Resolution 2.40 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																	.										.
Query SS confidence																																																	.										.
Query Sequence		K	V	K	K	A	V	I	P	V	A	G	L	G	T	R	M	L	P	A	T	K	A	I	P	K	E	M	L	P	L	V	D	K	P	L	I	Q	Y	V	V	N	E	C	I	A	A	G	.	I	T	E	I	V	L	V	T	H	.	S	S	K	N	S	I	E	N	H	F	D	T	S	F	E	L	E	A	M	L	E	K
Query Conservation																																																	.										.
Alig confidence					.						.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.										.																.	.	.	.	.	.	.
Template Conservation					.						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.
Template Sequence		E	V	V	.	A	I	V	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	A	F	Y	Q	L	D	G	Q	T	L	I	E	R	A	V	D	G	L	L	D	S	G	V	V	D	T	V	V	V	A	V	P	A	D	R	T	D	E	A	R	Q	I	L	G	H	R	A	M	.	.	.	.	.	.	.
Template Known Secondary structure					.						.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T				T	T														T	S											S	S	S								S		S	S	S		.	.	.	.	.	.	.
Template Predicted Secondary structure					.						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.
Template SS confidence
		7	.	.		10	.	.	.	.															.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	K	R	Q	L	L	D	E	V	Q	S	I	C	P	P	H	V	T	I	M	Q	V	R	Q	G	L	A	K	G	L	G	H	A	V	L	C	A	H	P	V	V	G	D	E	P	V	A	V	I	L	P	D	V	I	L	D	E	Y	E	S	D	L	S	Q	D	N	L	A	E	M	I	R	R	F	D	E	T	G	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	A	G	V	N	L	A	L	T	V	L	S	E	P	E	F	V	L	V	H	D	A	A	R	.	.	.	.	.	.	A	L	T	P	P	A	L	V	A	R	V	V	E	A	L	R	D	G	Y	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S					S							T	T		.	.	.	.	.	.	T	T														T	T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template SS confidence
																															76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	I	M	V	E	P	V	A	D	V	T	A	Y	G	V	V	D	C	K	G	V	E	L	A	P	G	E	S	V	P	M	V	G	V	V	E	K	P	K	A	D	V	A	P	S	N	L	A	I	V	G	R	Y	V	L	S	A	D	I	W	P	L	L	A	K	T	P	P	G	A	G	D	E	I	Q	L	T	D	A
Query Conservation
Alig confidence															.	.	.	.							.	.	.	.	.	.	.											.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.							.	.	.	.	.	.	.											.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	V	P	V	L	P	L	S	D	T	I	K	.	.	.	.	A	V	D	A	N	G	.	.	.	.	.	.	.	V	V	L	G	T	P	E	R	A	G	.	.	.	.	.	.	L	R	A	V	Q	T	P	Q	G	F	T	T	D	L	L	L	R	S	.	.	.	.	.	.	.	.	.	.	Y	Q	Y	T	D	D
Template Known Secondary structure										S	S				.	.	.	.				T	T	S	.	.	.	.	.	.	.								S	S		.	.	.	.	.	.						S													.	.	.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure															.	.	.	.							.	.	.	.	.	.	.											.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.								150	.	.	.	.	.	.	.	.	.							160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.											.	.	180	.	.	.
		245	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		I	D	M	L	I	E	K	E	.	T	V	E	A	Y	H	M	K	G	K	S	H	D	C	G	N	K	L	G	Y	M	Q	A	F	V	E	Y
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		A	S	L	V	E	H	I	G	G	Q	V	Q	V	V	D	G	D	P	L	A	F	K	I	T	T	K	L	D	L	L	L	A	Q	A	I	V
Template Known Secondary structure									T										G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions