Job Description P0AEP3 Confidence 99.95% Date Thu Jan 5 11:23:50 GMT 2012 Rank 33 Aligned Residues 230 % Identity 15% Template c3oamD_ PDB info PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae Resolution 1.75 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	T	K	V	K	K	A	V	I	P	V	A	G	L	G	T	R	M	L	P	A	T	K	A	I	P	K	E	M	L	P	L	V	D	K	P	L	I	Q	Y	V	V	N	E	C	I	A	A	G	I	T	E	I	V	L	V	T	H	S	S	K	N	S	I	E	N	H	F	D	T	S	F	E	L	E	A	M	L	E
Query Conservation
Alig confidence						.	.	.															.	.	.	.	.	.																																		.	.										.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.															.	.	.	.	.	.																																		.	.										.	.	.	.	.	.	.	.	.
Template Sequence		M	S	F	T	.	.	.	V	V	I	P	A	R	Y	Q	S	T	R	L	P	G	.	.	.	.	.	.	K	P	L	A	D	I	G	G	K	P	M	I	Q	W	V	Y	E	Q	A	M	Q	A	G	A	D	R	V	I	I	A	T	D	D	.	.	E	R	V	E	Q	A	V	Q	A	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						.	.	.							S			S	S	S	T	T	.	.	.	.	.	.	G	G	G				T	T														T	T		S							S		.	.										.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.															.	.	.	.	.	.																																		.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.				.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		K	R	V	K	R	Q	L	L	D	E	V	Q	S	I	C	P	P	H	V	T	I	M	Q	V	R	Q	G	L	A	K	G	L	G	H	A	V	L	C	A	H	P	V	.	.	V	G	D	E	P	V	A	V	I	L	P	D	V	I	L	D	E	Y	E	S	D	L	S	Q	D	N	L	A	E	M	I	R	R	F	D	E
Query Conservation																																												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.																		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	G	V	V	C	M	T	S	P	N	H	Q	S	G	T	E	R	L	A	E	V	V	A	K	M	A	I	P	A	D	H	I	V	V	N	V	Q	G	D	E	P	L	I	P	.	.	.	.	.	.	P	A	I	I	R	Q	V	A	D	N	L	A	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S	S	S			S											T	T			T	T								T	T		T	T			.	.	.	.	.	.													T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.
Template SS confidence
																		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.
		162	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.												.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure				.																		.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.																		.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	.	H	S	Q	I	M	V	E	P	V	A	D	V	T	A	Y	G	V	.	.	.	.	.	V	D	C	K	G	V	E	L	A	P	G	E	S	V	P	M	V	G	V	V	E	K	P	.	.	.	.	.	.	.	.	.	.	.	K	A	D	V	A	P	S	N	L	A	I	V	G	R	Y	V	L	S	A	D	I
Query Conservation				.																		.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																		.	.	.	.	.								.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence		C	S	A	P	M	A	T	L	A	V	E	I	E	D	E	A	E	V	F	N	P	N	A	V	K	V	I	T	D	K	S	G	.	.	.	.	.	.	.	Y	A	L	Y	F	S	R	A	T	I	P	W	D	R	D	N	F	A	K	A	D	K	A	I	V	Q	P	L	L	R	H	I	G	I	Y	A	Y	R	A	G	F
Template Known Secondary structure		S	S		S															T		T	T	S							T	T	S	.	.	.	.	.	.	.	B						S	S		S	S							T	S	S	S					S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		W	P	L	L	A	K	T	P	P	G	A	G	D	E	I	Q	L	T	D	A	I	D	M	L	I	E	K	E	T	V	E	A	Y	H	M	.	K	G	K	S	H	D	C	G	N	K	L	G	Y	M	Q	A	F	V	E	Y	G	I	R
Query Conservation																																					.
Alig confidence																																					.
Template Conservation
Template Sequence		I	N	T	Y	L	D	W	Q	P	S	Q	L	E	K	I	E	C	L	E	Q	L	R	V	L	W	H	G	E	K	I	H	V	A	V	A	L	E	A	P	P	A	G	V	D	T	P	E	D	L	E	V	V	R	R	I	V	A	E	R
Template Known Secondary structure								S										T		T	T						T	T									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions