Job Description P0AEP3 Confidence 42.59% Date Thu Jan 5 11:23:50 GMT 2012 Rank 83 Aligned Residues 179 % Identity 12% Template c3cgxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative nucleotide-diphospho-sugar transferase; PDBTitle: crystal structure of putative nucleotide-diphospho-sugar transferase2 (yp_389115.1) from desulfovibrio desulfuricans g20 at 1.90 a3 resolution Resolution 1.90 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		L	I	Q	Y	V	V	N	E	C	I	A	A	G	I	T	E	I	V	L	V	T	H	S	S	.	.	.	K	N	S	I	E	N	H	F	D	T	S	F	E	L	E	A	M	L	E	K	R	V	K	R	Q	L	L	D	E	V	Q	S	I	C	P	P	H	V	T	I	M	Q	V	R	Q	G	L	A	K	G	L	G	H
Query Conservation																										.	.	.
Alig confidence																										.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	Q	D	X	L	Q	G	L	A	R	L	H	A	D	L	H	I	C	Y	V	P	G	D	A	D	L	P	E	K	F	K	A	W	L	G	P	Q	H	X	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	Q	Q	G	L	D	L	G	E
Template Known Secondary structure											T	T	S	S	S											T	T											T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																														.	80	.	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		A	V	L	C	A	H	P	V	V	.	.	.	G	D	E	P	V	A	V	I	L	P	D	V	I	L	D	E	Y	E	S	D	L	S	Q	D	N	L	A	E	M	I	R	R	F	D	E	T	G	H	S	Q	I	M	V	E	P	V	A	D	V	T	A	Y	G	V	V	D	C	K	G	V	E	L	A	P	G	E	S	V
Query Conservation											.	.	.
Alig confidence											.	.	.													.	.	.	.	.	.																.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.																.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	X	K	H	A	X	Q	K	A	F	D	D	G	Y	D	R	V	V	L	X	G	S	D	I	.	.	.	.	.	.	P	D	Y	P	C	E	L	V	Q	K	A	L	N	D	L	.	Q	H	Y	D	A	A	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T		S							S	S		.	.	.	.	.	.	T	T													T	.	T	T		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.																.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		P	M	V	G	V	V	E	K	P	K	A	D	V	A	P	S	N	L	A	I	V	G	R	Y	V	L	S	A	D	I	W	P	L	L	A	K	T	P	P	G	A	G	D	E	I	Q	L	T	D	A	I	D	M	L	I	E	K	E	.	T	V	E	A	Y	H	M	K	G	K	S	H	D	C	G	N	K	L	G	Y	M
Query Conservation																																																												.
Alig confidence		.	.	.	.	.	.	.	.	.																							.	.	.	.	.																							.						.	.	.													.
Template Conservation		.	.	.	.	.	.	.	.	.																							.	.	.	.	.																													.	.	.													.
Template Sequence		.	.	.	.	.	.	.	.	.	P	A	F	D	G	G	Y	Y	L	I	G	F	R	K	D	S	F	C	P	D	V	F	.	.	.	.	.	D	G	I	R	W	G	E	A	D	V	Y	Q	P	T	V	E	K	X	R	R	A	R	L	E	V	L	Q	L	.	.	.	P	D	W	N	D	V	D	T	V	W	D	L	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.		B	T	T	S	S								G	G	G			G	G	G	G	.	.	.	.	.	T	T			T	T	T	S													T	T							.	.	.			B					S					.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																							.	.	.	.	.																													.	.	.													.
Template SS confidence
											136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.						.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	F	V	E	Y	G	I	R	H	N	T	L	G	T	E	F	K	A	W	L	E	E	E	M	G	I
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	N	V	L	Y	R	T	N	K	N	S	S	F	R	R	S	S	T	Y	A	L	L	R	E	N	D	A
Template Known Secondary structure		.								T	T	S	G	G	G	G	S									T
Template Predicted Secondary structure		.
Template SS confidence
			198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions