Job Description P0AEP3 Confidence 99.94% Date Thu Jan 5 11:23:50 GMT 2012 Rank 35 Aligned Residues 218 % Identity 17% Template c2y6pC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb Resolution 2.10 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	A	V	I	P	V	A	G	L	G	T	R	M	L	P	A	T	K	A	I	P	K	E	M	L	P	L	V	D	K	P	L	I	Q	Y	V	V	N	E	C	I	A	A	G	I	T	E	I	V	L	V	T	H	S	S	K	N	S	I	E	N	H	F	D	T	S	F	E	L	E	A	M	L	E	K	R	V	K	R
Query Conservation
Alig confidence																	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	V	I	I	P	A	R	L	G	S	T	R	L	K	.	.	.	.	.	.	E	K	P	L	K	N	L	L	G	K	P	L	I	R	W	V	V	E	G	L	V	K	T	G	E	R	V	I	L	A	T	D	S	E	R	V	K	E	V	V	E	D	L	C	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S			S	S	S	T	.	.	.	.	.	.	T	G	G	G	S			T	T													T	T	T	S							S									T	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.							.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	D	E	V	Q	S	I	C	P	P	H	V	T	I	M	Q	V	R	Q	G	L	A	K	G	L	G	H	A	V	L	C	A	H	P	V	V	G	D	E	P	V	A	V	I	L	P	D	V	I	L	D	E	Y	E	S	D	L	S	Q	D	N	L	A	E	M	I	R	R	F	D	E	T	G	H	S	Q	I	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	L	T	P	S	D	L	P	S	G	S	D	R	V	L	Y	V	V	R	D	L	D	V	D	L	I	I	N	Y	Q	G	D	E	P	F	V	Y	.	.	.	.	.	.	E	E	D	I	K	L	I	F	R	E	L	E	K	G	E	R	V	V	T	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T		S	S										T	T				S							T	T						.	.	.	.	.	.														T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
																		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		169	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure									.	.	.																														.	.	.	.
Query SS confidence									.	.	.																														.	.	.	.
Query Sequence		V	E	P	V	A	D	V	.	.	.	T	A	Y	G	V	V	D	C	K	G	V	E	L	A	P	G	E	S	V	P	M	V	G	V	V	E	K	P	K	.	.	.	.	A	D	V	A	P	S	N	L	A	I	V	G	R	Y	V	L	S	A	D	I	W	P	L	L	A	K	T	P	P	G	A	G	D	E	I	Q	L
Query Conservation									.	.	.																														.	.	.	.
Alig confidence									.	.	.													.	.	.	.	.	.	.											.	.	.	.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		A	R	K	D	K	E	A	Y	E	R	P	E	D	V	K	V	V	L	D	R	E	G	.	.	.	.	.	.	.	Y	A	L	Y	F	S	R	S	P	I	P	Y	F	R	K	N	D	T	F	Y	P	L	K	H	V	G	I	Y	G	F	R	K	E	T	L	M	E	F	G	A	M	P	P	S	K	L	E	Q	I	E	G
Template Known Secondary structure						S	T	T	T	T		T	T	S							T	T	S	.	.	.	.	.	.	.	B						S	S			S			S	S			S	S																					T	S										T
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.								.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	A	I	D	M	L	I	E	K	E	T	V	E	A	Y	H	M	K	G	K	S	H	D	C	G	N	K	L	G	Y	M	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	Q	L	R	L	L	E	N	G	I	K	I	K	V	L	I	T	E	N	Y	Y	H	G	V	D	T	E	E	D	L	K	I	V
Template Known Secondary structure			T							T	T										S							S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions