Job Description P0AEP3 Confidence 83.22% Date Thu Jan 5 11:23:50 GMT 2012 Rank 75 Aligned Residues 238 % Identity 13% Template c1xhbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 Resolution 2.50 Å

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		33	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure										.	.																.	.	.	.										.	.	.	.	.
Query SS confidence										.	.																.	.	.	.										.	.	.	.	.
Query Sequence		M	L	P	L	V	D	K	P	.	.	L	I	Q	Y	V	V	N	E	C	I	A	A	G	I	T	.	.	.	.	E	I	V	L	V	T	H	S	S	.	.	.	.	.	K	N	S	I	E	N	H	F	D	T	S	F	E	L	E	A	M	L	E	K	R	V	K	R	Q	L	L	D	E	V	Q	S	I	C	P	P	H
Query Conservation										.	.																.	.	.	.										.	.	.	.	.
Alig confidence										.	.																.	.	.	.										.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	V	F	H	N	E	A	W	S	T	L	L	R	T	V	H	S	V	I	N	R	S	P	R	H	M	I	E	E	I	V	L	V	D	D	A	S	E	R	D	F	L	K	R	P	L	E	S	Y	V	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K
Template Known Secondary structure						S	S																S	S		G	G	G										S				G	G	G	T									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																										.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	I	M	Q	V	R	Q	G	L	A	K	G	L	G	H	A	V	L	C	A	H	P	V	V	G	D	E	P	V	A	V	I	L	P	D	V	I	L	D	E	Y	E	S	D	L	S	Q	D	N	L	A	E	M	I	R	R	F	D	E	T	G	H	S	Q	I	M	V	E	P	V	A	D	V	T	A	Y	G	V	V
Query Conservation
Alig confidence																																																							.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.
Template Sequence		V	P	V	H	V	I	R	M	E	Q	R	S	G	L	I	R	A	R	L	K	G	A	A	V	S	R	G	Q	V	I	T	F	L	D	A	H	C	E	C	T	A	G	W	L	E	P	L	L	A	R	I	K	H	.	.	.	.	.	.	D	R	R	T	V	V	C	P	I	I	D	V	I	S	D	D	T	F	E	Y	M
Template Known Secondary structure		S								S	S																	S	S							S	S					T	T												.	.	.	.	.	.		T	T												S	S	S
Template Predicted Secondary structure																																																							.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.											.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.																																			.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.																																			.	.
Query Sequence		D	C	K	G	V	E	L	A	P	G	E	S	V	P	M	V	G	V	V	E	K	P	.	.	.	.	.	.	.	.	.	.	K	A	D	V	A	P	S	N	L	A	I	V	G	R	Y	V	L	S	A	D	I	W	P	L	L	A	K	T	P	P	G	A	G	D	.	.	E	I	Q	L	T	D	A	I	D	M	L	I
Query Conservation																								.	.	.	.	.	.	.	.	.	.																																			.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation
Template Sequence		A	G	S	D	M	T	Y	G	G	F	N	W	K	L	N	F	R	W	Y	P	V	P	Q	R	E	M	D	R	R	K	G	D	R	T	L	P	V	R	T	P	T	M	A	G	G	L	F	S	I	D	R	D	Y	F	Q	E	I	G	T	Y	D	A	G	M	D	I	W	G	G	E	N	L	E	I	S	F	R	I	W	Q
Template Known Secondary structure					T	T							T	T																T	T	T		T	T	S					S	B			S	S	S											T	T	S			T	T	S		T	T					S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.												.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	E	T	V	E	A	Y	H	M	K	G	K	S	H	D	C	G	N	K	L	G	Y	M	Q	A	F	V	E	Y	G	I	R	H	N	T	L	G	T	E	F	K	A	W	.	.	.	.	.	.	.	.	.	.	.	L	E	E	E	M	G	I	K	K
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.
Template Sequence		C	G	G	T	L	E	I	V	T	C	S	H	V	G	H	V	F	G	Q	I	I	N	K	N	N	R	R	L	A	E	V	W	M	D	E	.	F	K	N	F	F	Y	I	I	S	P	G	V	T	K	V	D	Y	G	D	I	S	S	R	L	G	L	R	R
Template Known Secondary structure		T	T																																G	G	.	G	G						T	S	T	T	G	G	G	S
Template Predicted Secondary structure																																					.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions