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Job DescriptionP45539
Confidence100.00%DateThu Jan 5 12:02:59 GMT 2012
Rank2Aligned Residues402
% Identity23%Templatec3lrcC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1)
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   7..10.........20.........30.........40.........50.........60.........70.........80......
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Query Sequence  QRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGSR
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Template Sequence  AHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGI. . . AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGP
Template Known Secondary structure 
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TTSSSSTTTTTSS


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STT


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TTTGGGGTT
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   7..10.........20.........30.........40. ........50.........60.........70.........80...
 
   87..90.........100.........110.........120.. .......130.........140.........150.........160.....
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Query Sequence  PLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI. DPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFT
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Template Conservation             
                                                                  
 
Template Sequence  FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIV
Template Known Secondary structure  TTTTTGGGSSSS



SSSS
S
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  IVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTL
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Template Sequence  GIAVFGWFWFRGETYMAAWNVSGLG. . TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVL
Template Known Secondary structure  S

SS
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..TSTT
TTGGGGGGSSS
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   164.....170.........180........ .190.........200.........210.........220.........230.........240.
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
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Query Sequence  LALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHP
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Template Sequence  STTAIMGMIPNTA. . . . . . . . . . . . . . . . . . . . . . GAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNK
Template Known Secondary structure  TT


S




T......................TTTSSTTTSS
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   242.......250.... .....260.........270.........280.........290.........
 
   326...330.........340....... ..350.........360.........370.........380.........390.........
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Query Sequence  KYNTPDVSIILQGALGIFFIFV. . . . . . SDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTPAFGLMTTLAIA
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Template Sequence  AGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHG. . . HFGKARPAYLAVTTIAFL
Template Known Secondary structure  SSS
TTSSS
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SSTTTTT
TT...
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   320.........330.........340.........350.........360.........370........ .380.........390......
 
   400.........410.........420.........430.........440..
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Query Sequence  SSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQLN
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Template Sequence  YCIWAV. . . . VGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP
Template Known Secondary structure  ....SS
TTTS




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   397..400.. .......410.........420.........430.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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