Job Description P45539 Confidence 96.91% Date Thu Jan 5 12:02:59 GMT 2012 Rank 7 Aligned Residues 379 % Identity 12% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.																		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																														.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	G	S	Q	E	L	Q	R	K	L	G	F	W	A	V	L	A	I	A	V	G	T	T	V	G	S	G	I	.	.	F	V	S	V	G	E	V	A	K	A	A	G	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	T	V	L	A	F	V	I	G	G	L	I	V	I	P	Q	M	C
Query Conservation																														.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	R	I	D	E	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y
Template Known Secondary structure		S	S	S	T	T				S	S																																T			T	T	S		S	S														S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.						.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		V	Y	A	E	L	S	T	A	Y	P	E	N	G	A	D	Y	.	.	.	.	.	V	Y	L	K	N	A	G	S	R	P	L	A	F	L	S	G	W	A	S	F	W	A	N	D	A	P	S	L	S	I	M	A	L	A	I	V	S	N	L	G	F	L	T	P	I	D	P	L	L	G	K	F	I	A	A	G	L	I	I
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L
Template Known Secondary structure			T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		137	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.										.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure									.	.	.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																									.	.	.	.	.	.	.	.	.
Query Sequence		A	F	M	L	L	H	L	.	.	.	.	R	S	V	E	G	G	A	A	F	Q	T	L	I	T	I	A	K	I	I	P	F	T	I	V	.	.	.	.	.	.	.	.	.	I	G	L	G	I	F	W	F	K	A	E	N	F	A	A	P	T	T	T	A	I	G	A	T	G	S	F	M	A	L	L	A	G	I	S	A
Query Conservation									.	.	.	.																									.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I
Template Known Secondary structure			T	T	G	G	G	T	T	S			S																								S																									T			T	T	T	T	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.					260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.
Query SS confidence																																																										.	.	.	.
Query Sequence		T	S	W	S	Y	T	G	M	A	S	I	C	Y	M	T	G	E	I	K	N	P	G	K	T	M	P	R	A	L	I	G	S	C	L	L	V	L	V	L	Y	T	L	L	A	L	V	I	S	G	L	M	P	F	D	K	L	.	.	.	.	A	N	S	E	T	P	I	S	D	A	L	T	W	I	P	A	L	G	S	T
Query Conservation																																																										.	.	.	.
Alig confidence																																																										.	.	.	.
Template Conservation
Template Sequence		F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P
Template Known Secondary structure									T	T												T	T	T																																				T						T	T		S										T	S	T
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.				350	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.							.
Query SS confidence																																																																								.	.	.							.
Query Sequence		A	G	I	F	V	A	I	T	A	M	I	V	I	L	G	S	L	S	S	C	V	M	Y	Q	P	R	L	E	Y	A	M	A	K	D	N	L	F	F	K	C	F	G	H	V	H	P	K	Y	N	T	P	D	V	S	I	I	L	Q	G	A	L	G	I	F	F	I	F	V	S	D	.	.	.	L	T	S	L	L	G	.
Query Conservation																																																																								.	.	.							.
Alig confidence																																					.	.	.	.	.	.	.																													.	.	.							.
Template Conservation																																					.	.	.	.	.	.	.
Template Sequence		G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	.	.	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V
Template Known Secondary structure		T																															T	T	T	T	.	.	.	.	.	.	.		S	S																									G	G	G
Template Predicted Secondary structure																																					.	.	.	.	.	.	.
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.								.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
				356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	Y	F	T	L	V	M	C	F	K	N	T	L	T	F	G	S	I	I	W	C	R	K	R	D	D	Y	K	P	L	W	R
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R
Template Known Secondary structure																										T
Template Predicted Secondary structure
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.