Job Description P45539 Confidence 100.00% Date Thu Jan 5 12:02:59 GMT 2012 Rank 3 Aligned Residues 431 % Identity 11% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	E	L	Q	R	K	L	G	F	W	A	V	L	A	I	A	V	G	T	T	V	G	S	G	I	F	V	S	V	G	E	V	A	K	A	A	G	T	P	W	L	T	V	L	A	F	V	I	G	G	L	I	V	I	P	Q	M	C	V	Y	A	E	L	S	T	A	Y	P	E	N	G	A	D	Y	V	Y	L	K	N
Query Conservation
Alig confidence																																				.																																			.	.
Template Conservation																																				.																																			.	.
Template Sequence		T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	.	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	I	N	F	T	V	A	A	R	M
Template Known Secondary structure				G	G	G			B															S	T										T	.	T	T	S																								T								.	.							T	T	T
Template Predicted Secondary structure																																				.																																			.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		A	G	S	R	P	L	A	F	L	S	G	W	A	S	F	W	A	N	D	A	P	S	L	S	I	M	A	L	A	I	V	S	N	L	G	F	L	T	P	I	D	P	L	L	G	K	F	.	I	A	A	G	L	I	I	A	F	M	L	L	H	L	R	S	V	E	G	G	A	A	F	Q	T	L	I	T	I	A	K	I
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P	V	L	L
Template Known Secondary structure		T	S		T	T	T	T																																																							T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		I	P	F	T	I	V	I	G	L	G	I	F	W	F	K	A	E	.	N	F	A	A	P	T	T	T	A	I	G	A	T	G	S	F	M	A	L	L	A	G	I	S	A	T	S	W	S	Y	T	G	M	A	S	I	C	Y	M	T	G	E	I	K	N	P	G	K	T	M	P	R	A	L	I	G	S	C	L	L	V	L
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q
Template Known Secondary structure																T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	Y	T	L	L	A	L	V	I	S	G	L	M	P	F	D	K	L	A	N	S	E	T	P	I	S	D	A	L	T	W	I	P	A	L	G	S	T	A	G	I	F	V	A	I	T	A	M	I	V	I	L	G	S	L	S	S	C	V	M	Y	Q	P	R	L	E	Y	A	M	A	K	D	N	L	F	F	K	C	F
Query Conservation
Alig confidence																												.	.
Template Conservation																												.	.
Template Sequence		W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	.	.	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F
Template Known Secondary structure																								S		S		.	.										T																				T	T						T											S	T	T	T
Template Predicted Secondary structure																												.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380						.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		G	H	V	H	P	K	Y	N	T	P	D	V	S	I	I	L	Q	G	A	L	G	I	F	F	I	F	V	S	D	L	T	S	L	L	G	Y	F	T	L	V	M	C	F	K	N	T	L	T	F	G	S	I	I	W	C	R	K	R	D	D	.	.	.	.	.	Y	K	P	L	W	R	T	P	A	F	G	L	M	T	T
Query Conservation																																																														.	.	.	.	.
Alig confidence						.	.	.	.	.																																																				.	.	.	.	.
Template Conservation						.	.	.	.	.
Template Sequence		T	F	K	T	.	.	.	.	.	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W
Template Known Secondary structure						.	.	.	.	.												T		G	G	G	T														T	T													T	T	S	T	T								T	B	S	S	S	T	T		T	B	T	T	B
Template Predicted Secondary structure						.	.	.	.	.
Template SS confidence
		335	.	.	.						.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	A	S	S	L	I	L	V	A	S	T	F	V	W	A	P	I	P	G	L	I	C	A	V	I	V	I	A	T	G	L	P	A	Y	A	F	W	A	K	R	S	R	Q	L	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E
Template Known Secondary structure																T		G	G	G																					T	T	T	S		S			G
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.