Job Description P37180 Confidence 62.17% Date Thu Jan 5 11:54:55 GMT 2012 Rank 3 Aligned Residues 372 % Identity 11% Template d1v54a_ SCOP info Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Resolution 1.80

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		5	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50										.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure									.	.																																								.	.	.	.	.	.	.	.	.
Query SS confidence									.	.																																								.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	P	L	G	G	K	.	.	I	I	S	K	P	V	M	I	F	G	P	L	I	V	I	C	M	L	L	I	V	K	R	L	V	F	G	L	G	S	V	S	D	L	N	G	G	F	P	.	.	.	.	.	.	.	.	.	W	G	V	W	I	A	F	D	L	L	I	G	T	G	F	A	C	G	G	W	A	L	A
Query Conservation									.	.																																								.	.	.	.	.	.	.	.	.
Alig confidence									.	.																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	M	I	G	A	P	D	M	A	F	P	R	M	N	N	M	S	F	W	L	L	P	P	S	F	L	L	L	L	A	S	S	M	V	E	A	G	A	G	T	G	W	T	V	Y	P	P	L	A	G	N	L	A	H	A	G	A	S	V	D	L	T	I	F	S	L	H	L	A	G	V	S	S	I	L	G	A	I	N
Template Known Secondary structure					T	T		S	S		S	S										T														S	T	T				S	T	T	T	T		T	T	T	T	S	T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.														.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Query Sequence		W	A	V	Y	V	F	N	R	G	Q	Y	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	R	P	A	L	L	A	S	L	F	G	Y	S	L	G	G	L	S	I	T	I	D	V	G	R	Y	W	N	L	P	Y	F	Y	I	P	G	H	F	N	V	N	S	V	L	F	E	T	A	.	.	.	V	C
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Template Conservation
Template Sequence		F	I	T	T	I	I	N	M	K	P	P	A	M	S	Q	Y	Q	T	P	L	F	V	W	S	V	M	I	T	A	V	L	L	L	L	S	L	P	V	L	A	A	G	I	T	M	L	L	T	D	R	N	L	N	T	T	F	F	D	P	A	G	G	G	D	P	I	L	Y	Q	H	L	F	W	F	F	G	H	P	E	V
Template Known Secondary structure									S	S		T	T			G	G	G	S																																		S				S	S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	I	Y	I	G	V	M	A	L	E	F	A	P	A	L	F	E	R	L	G	W	K	V	S	L	Q	R	L	N	K	V	M	F	F	I	I	A	L	G	A	L	L	P	T	M	H	Q	S	S	M	G	S	L	M	I	S	A	G	Y	K	V	H	P	L	W	Q	S	Y	E	M	L	P	L	F	S	L	L	T	A
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.	.								.
Template Conservation																																																						.	.	.	.	.	.	.	.	.								.
Template Sequence		Y	I	L	I	L	P	G	F	G	M	I	S	H	I	V	T	Y	Y	S	G	K	K	E	P	F	G	Y	M	G	M	V	W	A	M	M	S	I	G	F	L	G	F	I	V	W	A	H	H	M	F	T	V	.	.	.	.	.	.	.	.	.	G	M	D	V	D	T	R	.	A	Y	F	T	S	A	T	M	I	I	A
Template Known Secondary structure																				T	T		S	S		T	T															T	T	S		G	G	G	G		T	T	S	.	.	.	.	.	.	.	.	.								.										T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.								.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.										.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	M	G	F	S	I	V	I	F	E	G	S	L	V	Q	A	G	L	R	G	N	G	P	D	E	K	S	L	F	V	K	L	T	N	T	I	S	V	L	L	A	I	F	I	V	L	R	F	G	E	L	I	Y	R	D	K	L	S	L	A	F	A	G	D	F	Y	S	V	M	F	W	I	E	V	L	L	M	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	T	G	V	K	V	F	S	W	L	A	T	L	H	G	G	N	I	K	W	S	P	A	M	M	W	A	L	G	F	I	F	L	F	T	V	G	G	L	T	G	I	V	L	A	N	S	S	L	D	I	V	L	H	D	T	Y	Y	V	V	A	H	F	H	Y	V	L	S	M	G	A	V	F	A	I	M	G	G	F
Template Known Secondary structure																T	T																																							T	T	B												T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.			.	340	.	.	.	.	.	.	.	.	.	350	.							.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.														.	.	.	.	.	.
Query SS confidence																																											.	.														.	.	.	.	.	.
Query Sequence		P	L	V	V	L	R	V	A	K	L	R	N	D	S	R	M	L	F	L	S	A	L	S	A	L	L	G	C	A	T	W	R	L	T	Y	S	L	V	A	F	N	.	.	P	G	G	G	Y	A	Y	F	P	T	W	E	E	.	.	.	.	.	.	L	L	I	S	I	G	F	V	A	I	E	I	C	A	Y	I	V	L
Query Conservation																																											.	.														.	.	.	.	.	.
Alig confidence																																											.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		V	H	W	F	P	L	F	S	G	Y	T	L	N	D	T	W	A	K	I	H	F	A	I	M	F	V	G	V	N	M	T	F	F	P	Q	H	F	L	G	L	S	G	M	P	R	R	Y	S	D	Y	P	D	A	Y	T	M	W	N	T	I	S	S	M	G	S	F	I	S	L	T	A	V	M	L	M	V	F	I	I	W
Template Known Secondary structure										S	B																							T								T	T		B	T	T		S	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	L	L	P	I	L	P	P	L	K	Q	N	D	H	N	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	F	A	S	K	R	E	V	L	T	V	D	L	T	T	T
Template Known Secondary structure									B					T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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