Job Description P37180 Confidence 2.41% Date Thu Jan 5 11:54:55 GMT 2012 Rank 42 Aligned Residues 358 % Identity 10% Template c3mk7K_ PDB info PDB header:oxidoreductase Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n; PDBTitle: the structure of cbb3 cytochrome oxidase Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		P	Q	P	L	G	G	K	I	.	I	S	K	P	V	M	I	F	G	P	L	I	V	I	C	M	L	L	I	V	K	R	L	V	F	G	L	G	S	V	S	D	L	N	G	G	F	P	W	G	V	W	I	A	F	D	L	L	I	G	T	G	F	A	C	G	G	W	A	L	A	W	A	V	Y	V	F	N	R	G	Q
Query Conservation										.
Alig confidence										.																												.																.	.	.	.	.	.
Template Conservation																																						.																.	.	.	.	.	.
Template Sequence		Q	R	T	C	Q	T	T	L	F	A	P	K	L	A	A	F	T	F	W	G	W	Q	L	V	I	L	L	A	A	I	S	L	P	L	G	F	.	T	S	S	K	E	Y	A	E	L	E	W	P	I	D	I	.	.	.	.	.	.	L	I	T	I	V	W	V	A	Y	A	V	V	F	F	G	T	L	A	K	R	K	V
Template Known Secondary structure						T	S			S	S																						T	T	T	T		.	B				T	T			B							.	.	.	.	.	.																			T		S	S
Template Predicted Secondary structure																																						.																.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		Y	H	P	L	V	R	P	A	L	L	A	S	L	F	G	Y	S	L	G	G	L	S	I	T	I	D	V	G	R	Y	W	N	L	P	Y	F	Y	I	P	G	H	F	N	V	N	S	V	L	F	E	T	A	V	C	M	T	I	Y	.	.	I	G	V	M	A	L	E	F	A	P	A	L	F	E	R	L	G	W	K	V
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		K	H	I	Y	V	G	N	W	F	F	G	A	F	I	L	T	V	A	I	L	H	V	V	N	N	L	E	I	P	V	T	A	M	K	S	Y	S	L	Y	A	G	A	T	D	A	M	V	Q	W	W	Y	G	H	N	A	V	G	F	F	L	T	A	G	F	L	G	I	M	Y	Y	F	V	P	K	Q	A	E	R	P	V
Template Known Secondary structure		S	S																							T							T	T					S																					T	T	T																T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	Q	R	L	N	K	V	M	F	F	I	I	A	L	G	A	L	L	P	T	M	H	Q	S	S	M	G	S	L	M	I	S	A	G	Y	K	V	H	P	L	W	Q	S	Y	E	M	L	P	L	F	S	L	L	T	A	F	I	M	G	F	S	I	V	I	F	E	G	S	L	V	Q	A	G	L	R	G	N	G	P
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	S	Y	R	L	S	I	V	H	F	W	A	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	Y	I	W	A	G	P	H	H	L	H	Y	T	A	L	P	D	W	A	Q	S	L	G	M	V	M	S	L	I	L	L	A	P	S	W	G	G	M	I	N	G	M	M	T	L	S	G	A	W
Template Known Secondary structure		S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	G	G	G	S	S	T	T	S	S	S															T													G	G	G	T	T	G	G
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.																	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.									.	.	.	.	.	.			310	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.							.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.							.	.
Query Sequence		D	E	K	S	L	F	V	K	L	T	N	T	I	S	V	L	L	A	I	F	I	V	L	R	F	G	E	L	I	Y	R	D	K	L	S	L	A	F	A	G	D	F	Y	S	V	M	F	W	I	E	V	L	L	M	L	F	P	L	V	V	L	R	.	.	.	.	.	.	.	.	V	A	K	L	R	N	.	.	D	S
Query Conservation																																																																.	.	.	.	.	.	.	.							.	.
Alig confidence																																																																.	.	.	.	.	.	.	.							.	.
Template Conservation
Template Sequence		H	K	L	R	S	D	P	I	L	R	F	L	V	V	S	L	A	F	Y	G	M	S	T	F	E	G	P	M	M	A	I	K	T	V	N	A	L	S	H	Y	T	D	W	T	I	G	H	V	H	A	G	A	L	G	W	V	A	M	V	S	I	G	A	L	Y	H	L	V	P	K	V	F	G	R	E	Q	M	H	S	I
Template Known Secondary structure		G																													T	S								T	T	S														T																	T	T		S	S		S		S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.								.	340	.	.	.	.	.	.	.	.	.	350	.										.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query Sequence		R	M	L	F	L	S	A	L	S	A	L	L	G	C	A	T	W	R	L	T	Y	S	L	V	A	F	N	.	.	.	.	.	.	.	P	G	G	G	Y	A	Y	F	P	T	W	E	E	.	.	.	.	.	.	.	.	.	L	L	I	S	I	G	F	V	A	I	E	I	C	A	Y	I	V	L	I	R	L	L	P	I
Query Conservation																													.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	I	N	T	H	F	W	L	A	T	I	G	T	V	L	Y	I	A	S	M	W	V	N	G	I	A	Q	G	L	M	W	R	A	I	N	D	D	G	T	L	T	Y	S	F	V	E	S	L	E	A	S	H	P	G	F	V	V	R	M	I	G	G	A	I	F	F	A	G	M	L	V	M	A	Y	N	T	W	R	T
Template Known Secondary structure																																				B		T	T	S	S	B	S	S									T
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	P	L	K	Q	N	D	H	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	A	A	K	P	A	E	Y	D
Template Known Secondary structure				S		S	S
Template Predicted Secondary structure
Template SS confidence
		459	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions