Job Description P37180 Confidence 2.52% Date Thu Jan 5 11:54:55 GMT 2012 Rank 40 Aligned Residues 345 % Identity 8% Template c2xq2A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Resolution 2.73 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		G	G	K	I	I	S	K	P	V	M	I	F	G	P	L	I	V	I	C	.	M	L	L	I	V	K	R	L	V	F	G	L	G	S	V	S	D	L	N	G	G	F	P	W	G	V	W	I	A	F	D	L	L	I	G	T	G	F	A	C	G	G	W	A	L	A	W	A	V	Y	V	F	N	R	G	Q	Y	H	P	L
Query Conservation																					.
Alig confidence																					.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	Y	G	G	V	V	W	T	D	V	I
Template Known Secondary structure																				T																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.															.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.													.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	P	A	L	L	A	S	L	F	G	Y	S	L	G	G	L	S	I	T	I	D	V	G	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	W	N	L	P	Y	F	Y	I	P	G	H	F	N	V	N	S	V	L	F	E	T	A	V	C	M	T	I	Y	I	G	V	M	A	L	E	F	A	P	A	L	F	E
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I
Template Known Secondary structure																							G	G	G														G	G	G	S		S	S			S	S	S	G	G	G	G	T	S		T	T					S	T										T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																										.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	G	W	K	V	S	L	Q	R	L	N	K	V	M	F	F	I	I	A	L	G	A	L	L	P	T	M	H	Q	S	S	M	G	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	S	A	G	Y	K	V	H	P	L	W	Q	S	Y	E	M	L	P
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	R	T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	A	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V	V	F	A
Template Known Secondary structure						T	T	S																T	T	T						T											T														S	T	B	G	G	G								T	S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.							.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		L	F	S	L	L	T	A	F	I	M	G	F	S	I	V	I	F	E	G	S	L	V	Q	A	G	L	.	.	.	.	.	.	R	G	N	G	P	D	E	K	S	L	F	V	K	L	T	N	T	I	S	V	L	L	A	I	F	I	V	L	R	F	G	E	L	I	Y	R	D	K	L	S	L	A	F	A	G	D	F	Y
Query Conservation																												.	.	.	.	.	.
Alig confidence		.																										.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	A	L	I	A	P	M	L	G	G	I	G	Q	C	F	Q	Y	I	Q	E	Y	T	G	L	V	S
Template Known Secondary structure		.																									T					T		S																										G	G	G	G	G	G		B											T	T	T
Template Predicted Secondary structure		.
Template SS confidence
			357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	M	F	W	I	E	V	L	L	M	L	F	P	L	V	V	L	R	V	A	K	L	R	N	D	S	R	M	L	F	L	S	A	L	S	A	L	L	G	C	A	T	W	R	L	T	Y	S	L	V	A	F	N	P	G	G	G	Y	A	Y	F	P	T	W	E	E	L	L	I	S	I	G	F	V	A	I	E	I	C
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	.	.	.	.	.	.	.	.	.	I	L	A	V	F	L	L	G	L	F	W	K	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	L	S	M	P	F	M	D	Q	M	L	Y	T	L	L	F	T	M	V
Template Known Secondary structure				.	.	.	.	.	.	.	.	.												T	T																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		436	.										.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.															.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	I	V	L	I	R	L	L	P	I	L	P	P	L	K	Q	N	D	H	N	R	H	E	A	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	A	F	T	S	L	S	T	S	I	N	D	D	D	P	K	G	I	S	V	T	S	S	M	F	V
Template Known Secondary structure												S	S	S	S		T	T						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions