Job Description P37180 Confidence 39.03% Date Thu Jan 5 11:54:55 GMT 2012 Rank 7 Aligned Residues 373 % Identity 12% Template c1m56G_ PDB info PDB header:oxidoreductase Chain: G: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobactor2 sphaeroides (wild type) Resolution 2.30 Å

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		5	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.														.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	P	L	G	G	K	.	.	I	I	S	K	P	V	M	I	F	G	P	L	I	V	I	C	M	L	L	I	V	K	R	L	V	F	G	L	G	S	V	S	D	L	N	G	G	F	P	W	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	W	I	A	F	D	L	L	I	G	T	G	F	A	C	G	G
Query Conservation									.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.																														.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		P	L	H	I	G	A	P	D	M	A	F	P	R	M	N	N	L	S	Y	W	L	Y	V	A	G	T	S	L	A	V	A	S	L	F	A	P	G	G	.	N	G	Q	L	G	S	G	I	G	W	V	L	Y	P	P	L	S	T	S	E	S	G	Y	S	T	D	L	A	I	F	A	V	H	L	S	G	A	S	S	I	L
Template Known Secondary structure						T		S	S		S																						G	G	G	S			T	.	T	T			S			S		T	T			T	T							S	S
Template Predicted Secondary structure																																								.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.														90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	A	L	A	W	A	V	Y	V	F	N	R	G	Q	Y	H	P	L	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	L	A	S	L	F	G	Y	S	L	G	G	L	S	I	T	I	D	V	G	R	Y	W	N	L	P	Y	F	Y	I	P	G	H	F	N	V	N	S	V	L	F	E	T	A	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	I	N	M	I	T	T	F	L	N	M	R	A	P	G	M	T	M	H	K	V	P	L	F	A	W	S	I	F	V	T	A	W	L	I	L	L	A	L	P	V	L	A	G	A	I	T	M	L	L	T	D	R	N	F	G	T	T	F	F	Q	P	S	G	G	G	D	P	V	L	Y	Q	H	I	L	W	F	F	G
Template Known Secondary structure													S			T	T			G	G	G	S																																		S				S	S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		137	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		C	M	T	I	Y	I	G	V	.	.	M	A	L	E	F	A	P	A	L	F	E	R	L	G	W	K	V	S	L	Q	R	L	N	K	V	M	F	F	I	I	A	L	G	A	L	L	P	T	M	H	Q	S	S	M	G	S	L	M	I	S	A	G	Y	K	V	H	P	L	W	Q	S	Y	E	M	L	P	L	F	S	L
Query Conservation										.	.
Alig confidence										.	.																																												.	.	.	.	.	.	.	.	.										.
Template Conservation																																																							.	.	.	.	.	.	.	.	.										.
Template Sequence		H	P	E	V	Y	I	I	V	L	P	A	F	G	I	V	S	H	V	I	A	T	F	A	K	K	P	I	F	G	Y	L	P	M	V	Y	A	M	V	A	I	G	V	L	G	F	V	V	W	A	H	H	M	Y	.	.	.	.	.	.	.	.	.	T	A	G	L	S	L	T	Q	Q	.	S	Y	F	M	M	A	T	M
Template Known Secondary structure																									T	S			T	T															T	T	S		G	G	G	G	G	T	.	.	.	.	.	.	.	.	.	T	S	S							.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.										.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.										.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	F	I	M	G	F	S	I	V	I	F	E	G	S	L	V	Q	A	G	L	R	G	N	G	P	D	E	K	S	L	F	V	K	L	T	N	T	I	S	V	L	L	A	I	F	I	V	L	R	F	G	E	L	I	Y	R	D	K	L	S	L	A	F	A	G	D	F	Y	S	V	M	F	W	I	E	V	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	A	V	P	T	G	I	K	I	F	S	W	I	A	T	M	W	G	G	S	I	E	L	K	T	P	M	L	W	A	L	G	F	L	F	L	F	T	V	G	G	V	T	G	I	V	L	S	Q	A	S	V	D	R	Y	Y	H	D	T	Y	Y	V	V	A	H	F	H	Y	V	M	S	L	G	A	V	F	G	I	F
Template Known Secondary structure			T																T	T	S																														S								T	T	B													T	T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.			.	340	.	.	.	.	.	.	.	.	.	350	.							.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																																														.	.														.	.	.	.	.	.
Query SS confidence																																														.	.														.	.	.	.	.	.
Query Sequence		M	L	F	P	L	V	V	L	R	V	A	K	L	R	N	D	S	R	M	L	F	L	S	A	L	S	A	L	L	G	C	A	T	W	R	L	T	Y	S	L	V	A	F	N	.	.	P	G	G	G	Y	A	Y	F	P	T	W	E	E	.	.	.	.	.	.	L	L	I	S	I	G	F	V	A	I	E	I	C	A	Y
Query Conservation																																														.	.														.	.	.	.	.	.
Alig confidence																																														.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	I	Y	F	W	I	G	K	M	S	G	R	Q	Y	P	E	W	A	G	K	L	H	F	W	M	M	F	V	G	A	N	L	T	F	F	P	Q	H	F	L	G	R	Q	G	M	P	R	R	Y	I	D	Y	P	E	A	F	A	T	W	N	F	V	S	S	L	G	A	F	L	S	F	A	S	F	L	F	F	L	G
Template Known Secondary structure													S																								S								T	T		B	S	S		S	S			S	T	T
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.					.	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		I	V	L	I	R	L	L	P	I	L	P	P	L	K	Q	N	D	.	.	.	.	H	N	R	H	E
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.
Template Conservation
Template Sequence		V	I	F	Y	T	L	T	R	G	A	R	V	T	A	N	N	Y	W	N	E	H	A	D	T	L	E
Template Known Secondary structure															S	S		S	S		T	T			S	G	G
Template Predicted Secondary structure
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.