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Job DescriptionP37180
Confidence61.55%DateThu Jan 5 11:54:55 GMT 2012
Rank5Aligned Residues374
% Identity11%Templatec1fftF_
PDB info PDB header:oxidoreductaseChain: F: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10. ........20.........30.........40.........50 .........60.........70...
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Query Sequence  PQPLGGK. . IISKPVMIFGPLIVICMLLIVKRLVFGLGSVSDLNGGFP. . . . . . . . . WGVWIAFDLLIGTGFACGGWALA
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Template Sequence  PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGIN
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   128.130.........140.........150.........160.........170.........180.........190.........200.......
 
   74.....80....... ..90.........100.........110.........120.........130.........140
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Query Sequence  WAVYVFNRGQYHPL. . . . . . . . . . . . . VRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTI
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Template Sequence  FFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEV
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   208.210.........220.........230.........240.........250.........260.........270.........280.......
 
   141... .....150.........160.........170.........180.........190.........200.........210........
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Query Sequence  YIGV. . MALEFAPALFERLGWKVSLQRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAF
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Template Sequence  YILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTM. . . . . . . . . GAGANVN. AFFGITTMIIAI
Template Known Secondary structure  TTTS

SSTTSS
GGGGTTTT.........T

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   288.290.........300.........310.........320.........330........ .340..... ....350.......
 
   219220.........230.........240.........250.........260.........270.........280.........290........
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Query Sequence  IMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLSLAFAGDFYSVMFWIEVLLMLFP
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Template Sequence  PTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMT
Template Known Secondary structure  TTTT




STSTTTTBTTT
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   358.360.........370.........380.........390.........400.........410.........420.........430.......
 
   299300.........310.........320.........330........ .340...... . ..350.........360.........370...
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Query Sequence  LVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSLVAFN. . PGGGYAYF. P. . TWEELLISIGFVAIEICAYIVLIRLL
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Template Sequence  YWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMY
Template Known Secondary structure  SSS


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   438.440.........450.........460.........470.........480.........490.........500.........510.......
 
   374.....380........
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Query Sequence  PILPPLKQNDHNRHE
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Template Sequence  VSIRDRDQNRDLTGD
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   518.520.........530..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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