Job Description P09158 Confidence 100.00% Date Thu Jan 5 11:02:05 GMT 2012 Rank 15 Aligned Residues 245 % Identity 20% Template c3gjyA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of a probable spermidine synthase from2 corynebacterium glutamicum atcc 13032 Resolution 1.47 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.							.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																						.	.														.	.	.	.	.	.																			.	.	.	.	.
Query SS confidence																						.	.														.	.	.	.	.	.																			.	.	.	.	.
Query Sequence		V	L	Y	H	E	K	T	D	H	Q	D	L	I	I	F	E	N	A	A	F	.	.	G	R	V	M	A	L	D	G	V	V	Q	T	T	.	.	.	.	.	.	E	R	D	E	F	I	Y	H	E	M	M	T	H	V	P	L	L	A	.	.	.	.	.	H	G	H	A	K	H	V	L	I	I	G	G	G	D	G	A
Query Conservation																						.	.														.	.	.	.	.	.																			.	.	.	.	.
Alig confidence																						.	.														.	.	.	.	.	.																			.	.	.	.	.
Template Conservation
Template Sequence		I	A	G	T	Y	E	G	E	Y	S	V	I	E	L	E	A	D	S	Y	T	T	D	G	W	L	I	S	I	N	G	V	P	S	S	H	I	V	L	G	Q	P	Q	A	L	E	F	E	Y	X	R	W	I	A	T	G	A	R	A	F	I	D	A	H	Q	D	A	S	K	L	R	I	T	H	L	G	G	G	A	C	T
Template Known Secondary structure									S	S	S								S	S	S	T	T							T	T								T	T		T	T				S																		S		G	G	G							S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		M	L	R	E	V	T	R	H	K	N	V	E	S	I	T	M	V	E	I	D	A	G	V	V	S	F	C	R	Q	Y	L	P	N	H	N	A	G	S	Y	D	D	P	R	F	K	L	V	I	D	D	G	V	N	F	V	N	Q	.	T	S	Q	T	F	D	V	I	I	S	D	C	T	D	P	I	G	P	G	E	S	L
Query Conservation																																																											.
Alig confidence																																	.	.	.	.	.																						.
Template Conservation																																	.	.	.	.	.
Template Sequence		X	A	R	Y	F	A	D	V	Y	P	Q	S	R	N	T	V	V	E	L	D	A	E	L	A	R	L	S	R	E	W	F	.	.	.	.	.	D	I	P	R	A	P	R	V	K	I	R	V	D	D	A	R	X	V	A	E	S	F	T	P	A	S	R	D	V	I	I	R	D	V	F	A	G	A	I	T	P	Q	N	F
Template Known Secondary structure										S	T	T								S												S	.	.	.	.	.					T	T	T						S								T			T	T										S	T	T	S				G	G	G
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		F	T	S	A	F	Y	E	G	C	K	R	C	L	N	P	G	G	I	F	V	A	Q	N	G	V	C	F	L	Q	Q	E	E	A	I	D	S	H	R	K	L	S	H	Y	F	S	D	V	G	F	Y	Q	A	A	I	P	T	Y	Y	G	G	I	M	T	F	A	W	A	T	D	N	D	A	L	R	H	L	S	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																													.																																																		.	.	.
Template Conservation																													.
Template Sequence		T	T	V	E	F	F	E	H	C	H	R	G	L	A	P	G	G	L	Y	V	A	N	C	G	D	H	S	.	D	L	R	G	A	K	S	E	L	A	G	X	X	E	V	F	E	H	V	A	V	I	A	D	P	P	X	L	K	G	R	R	Y	G	N	I	I	L	X	G	S	D	T	E	F	F	S	S	N	S	T	E
Template Known Secondary structure		S	B																									T	.	T																S												T	T	S	S										S	S					T	T	S
Template Predicted Secondary structure																													.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	I	I	Q	A	R	F	L	A	S	G	L	K	C	R	Y	Y	N	P	A	I	H	T	A	A	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	A	I	T	R	E	L	L	G	G	G	V	P	A	Q	Y	K	D	E	S	W	V	R	K	F	A	S
Template Known Secondary structure										T	S	S	S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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