Job Description P09158 Confidence 100.00% Date Thu Jan 5 11:02:05 GMT 2012 Rank 6 Aligned Residues 278 % Identity 35% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure														.	.																														.	.	.
Query SS confidence														.	.																														.	.	.
Query Sequence		M	A	E	K	K	Q	W	H	E	T	L	H	.	.	D	Q	F	G	Q	Y	F	A	V	D	N	V	L	Y	H	E	K	T	D	H	Q	D	L	I	I	F	E	N	A	.	.	.	A	F	G	R	V	M	A	L	D	G	V	V	Q	T	T	E	R	D	E	F	I	Y	H	E	M	M	T	H	V	P	L	L	A	H
Query Conservation														.	.																														.	.	.
Alig confidence														.	.																														.	.	.
Template Conservation
Template Sequence		L	I	S	G	G	W	F	R	E	E	N	D	Q	W	P	G	Q	A	X	S	L	R	V	E	K	V	L	Y	D	A	P	T	K	F	Q	H	L	T	I	F	E	S	D	P	K	G	P	W	G	T	V	X	A	L	D	G	C	I	Q	V	T	D	Y	D	E	F	V	Y	H	E	V	L	G	H	T	S	L	C	S	H
Template Known Secondary structure				T	T	S							T	T	S	T	T																	S	S	S									T	T	S	S								T	T						T	T	T														T	T	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		G	H	A	K	H	V	L	I	I	G	G	G	D	G	A	M	L	R	E	V	T	R	H	K	N	V	E	S	I	T	M	V	E	I	D	A	G	V	V	S	F	C	R	Q	Y	L	P	N	H	N	A	G	S	Y	D	D	P	R	F	K	L	V	I	D	D	G	V	N	F	V	N	Q	T	.	S	Q	T	F	D	V
Query Conservation																																																																											.
Alig confidence																																																				.																							.
Template Conservation																																																				.
Template Sequence		P	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	G	T	V	E	H	C	D	L	V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	.	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	L	A	F	V	R	Q	T	P	D	N	T	Y	D	V
Template Known Secondary structure		S											T	T	S							T	T		T	T									S																	.	G	G	G	G		T	T						S								T	S		T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		I	I	S	D	C	T	D	P	I	G	P	G	E	S	L	F	T	S	A	F	Y	E	G	C	K	R	C	L	N	P	G	G	I	F	V	A	Q	N	G	V	C	F	L	Q	Q	E	E	A	I	D	S	H	R	K	L	S	H	Y	.	F	S	D	V	G	F	Y	Q	A	A	I	P	T	Y	Y	G	G	I	M	T	F
Query Conservation																																																												.
Alig confidence										.	.	.																																																.
Template Conservation										.	.	.
Template Sequence		V	I	I	D	T	T	D	P	.	.	.	A	S	K	L	F	G	E	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A	S	V	Q	Y	A	L	X	H	V	P	T	Y	P	C	G	S	I	G	T
Template Known Secondary structure							S			.	.	.				S	S																									T	T	T																T		S										T	T	S	T	T	S
Template Predicted Secondary structure										.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	A	T	D	N	D	A	L	R	H	L	S	T	E	I	I	Q	A	R	F	L	A	S	G	L	K	C	R	Y	Y	N	P	A	I	H	T	A	A	F	A	L	P	Q	Y	L	Q	D	A	L
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		L	V	C	S	K	K	A	G	V	D	V	.	T	K	P	L	R	P	V	E	D	X	P	F	A	K	D	L	K	Y	Y	D	S	E	X	H	K	A	S	F	A	L	P	R	F	A	R	H	I	N
Template Known Secondary structure						S	S	T	T			T	.	T	S		S	S		G	G	G	S	T	T	G	G	G		S	S									T	T				G	G	G	G	G	G	G
Template Predicted Secondary structure													.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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