Job Description P09158 Confidence 100.00% Date Thu Jan 5 11:02:05 GMT 2012 Rank 9 Aligned Residues 263 % Identity 35% Template c2pssC_ PDB info PDB header:transferase Chain: C: PDB Molecule:spermidine synthase; PDBTitle: the structure of plasmodium falciparum spermidine synthase in its apo-2 form Resolution 2.20 Å

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		7	.	.	10	.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		W	H	E	T	L	H	.	.	.	D	Q	F	G	Q	Y	F	A	V	D	N	V	L	Y	H	E	K	T	D	H	Q	D	L	I	I	F	E	N	A	A	F	G	R	V	M	A	L	D	G	V	V	Q	T	T	E	R	D	E	F	I	Y	H	E	M	M	T	H	V	P	L	L	A	H	G	H	A	K	H	V	L	I
Query Conservation								.	.	.
Alig confidence								.	.	.
Template Conservation
Template Sequence		W	F	S	E	F	S	I	M	W	P	G	Q	A	F	S	L	K	I	K	K	I	L	Y	E	T	K	S	K	Y	Q	N	V	L	V	F	E	S	T	T	Y	G	K	V	L	V	L	D	G	V	I	Q	L	T	E	K	D	E	F	A	Y	H	E	M	M	T	H	V	P	M	T	V	S	K	E	P	K	N	V	L	V
Template Known Secondary structure								T	T	S	T	T																	S	S									S	S	S							T	T						T	T	T																S	S	S
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	G	D	G	A	M	L	R	E	V	T	R	H	K	N	V	E	S	I	T	M	V	E	I	D	A	G	V	V	S	F	C	R	Q	Y	L	P	N	H	N	A	G	S	Y	D	D	P	R	F	K	L	V	I	D	D	G	V	N	F	V	N	Q	T	S	Q	T	F	D	V	I	I	S	D	C	T	D	P	I
Query Conservation
Alig confidence																																														.																															.	.	.	.	.
Template Conservation																																														.																															.	.	.	.	.
Template Sequence		V	G	G	G	D	G	G	I	I	R	E	L	C	K	Y	K	S	V	E	N	I	D	I	C	E	I	D	E	T	V	I	E	V	S	K	I	Y	F	K	N	I	S	C	G	.	Y	E	D	K	R	V	N	V	F	I	E	D	A	S	K	F	L	E	N	V	T	N	T	Y	D	V	I	I	V	D	.	.	.	.	.
Template Known Secondary structure					T	T									T		T	T									S																	G	G	.	G	G	S	T	T						S							T	T			S									.	.	.	.	.
Template Predicted Secondary structure																																														.																															.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	G	E	S	L	F	T	S	A	F	Y	E	G	C	K	R	C	L	N	P	G	G	I	F	V	A	Q	N	G	V	C	F	L	Q	Q	E	E	A	I	D	S	H	R	K	L	S	H	Y	F	S	D	V	G	F	Y	Q	A	A	I	P	T	Y	Y	G	G	I	M	T	F	A	W	A	T	D	N	D	A	L	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	S	S	N	F	Y	E	K	I	Y	N	A	L	K	P	N	G	Y	C	V	A	Q	C	E	S	L	W	I	H	V	G	T	I	K	N	M	I	G	Y	A	K	K	L	F	K	K	V	E	Y	A	N	I	S	I	P	T	Y	P	C	G	C	I	G	I	L	C	C	S	K	T	D	T	G	L
Template Known Secondary structure		.	.	.	.	.	.	.																									T	T	T														T	T		S										T	T	S	G	G	G									S	S	T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	S	T	E	I	I	Q	A	R	F	L	A	S	G	L	K	C	R	Y	Y	N	P	A	I	H	T	A	A	F	A	L	P	Q	Y	L	Q	D	A	L	A	S
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		T	.	.	.	K	P	N	K	K	L	E	S	K	E	F	A	D	L	K	Y	Y	N	Y	E	N	H	S	A	A	F	K	L	P	A	F	L	L	K	E	I	E	N
Template Known Secondary structure		S	.	.	.	S		S	S				S	G	G	G	T	T		S	S									T	T											T	T
Template Predicted Secondary structure			.	.	.
Template SS confidence
		282				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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