 |
Job Description | P09158 | Confidence | 95.17% | Date | Thu Jan 5 11:02:05 GMT 2012 |
Rank | 349 | Aligned Residues | 104 |
% Identity | 10% | Template | c2ep9A_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:l-gulonate 3-dehydrogenase; |
PDBTitle: crystal structure of the rabbit l-gulonate 3-dehydrogenase2 (nadh form)
|
Resolution | 1.85 Å |
|
 |
  |   |
80 | . | . | . | . | . | . | . | |
|
. | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 140 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | V | L | I | I | G | G | G | . |
. |
D | G | A | M | L | R | E | V | T | R | H | K | N | V | E | S | I | T | M | V | E | I | D | A | G | V | V | S | F | C | R | Q | Y | L | P | N | H | N | A | G | S | Y | D | D | P | R | F | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | V | I | D | D | G | V | N | F | V |
Query Conservation |   |
  |
|
|
|
|
|   |
| . | . |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |
|
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|
|   |   | . | . |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
D | V | L | I | V | G | S | G | L | V | G | R | S | W | A | M | L | F | A | S | G | . |
. |
G | F | R | V | K | L | Y | D | I | E | P | R | Q | I | T | G | A | L | E | N | I | R | K | E | M | K | S | L | Q | Q | S | G | S | L | K | G | S | L | S | A | E | E | Q | L | S | L | I | S | S | C | T | N | L | A | E | A | V |
Template Known Secondary structure |   |
|  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | T |
|
|  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| S | S | S |
|  |  |  |  |  |  | T |  |  |  |
| S |
|  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
|
. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
  |
  |   |
146 | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | Q | T | S | Q | T | F | D | V | I | I | S | D | C | T | D | P | I | G | P | G | E | S | L | F | T | S | A | F | Y | E | G | C | K | R | C | L | N | P | G | G | I | F | V | A | Q | N | G | V |
Query Conservation |   |
  |   |   |   |   |   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |
|   |
|   |
|
|   |
|   |   |   |   |   |
Alig confidence |   |
|
|
| . | . | . | . |
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
| . | . | . | . |
|   |
|
|
| . | . | . | . | . |
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|   |
|
|   |
Template Sequence |   |
E | G | V | . |
. |
. |
. |
V | H | I | Q | E | . |
. |
. |
. |
. |
C | V | P | E | N | L | D | L | K | R | K | I | F | A | Q | L | D | S | I | V | D | D | R | V | V | L | S | S | S | S | S | C |
Template Known Secondary structure |   |
T | T |
| . | . | . | . | S |  |  |  |  | . | . | . | . | . |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S | S |
|  |  |  |  |
|
| S | S |
Template Predicted Secondary structure |   |
|
|
| . | . | . | . |
|  |  |  |  | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
86 | . | . | |
|
|
|
. | 90 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|