Job Description P09158 Confidence 100.00% Date Thu Jan 5 11:02:05 GMT 2012 Rank 13 Aligned Residues 258 % Identity 19% Template c2cmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori Resolution 2.0 Å

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		6	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		Q	W	H	.	E	T	L	H	D	Q	F	G	Q	Y	F	A	V	D	N	V	L	Y	H	E	K	T	D	H	Q	D	L	I	I	F	E	N	A	A	F	G	R	V	M	A	L	D	G	V	V	Q	T	T	E	R	D	E	F	I	Y	H	E	M	M	T	H	V	P	L	L	A	H	G	H	A	K	H	V	L	I	I
Query Conservation					.
Alig confidence					.																																																		.
Template Conservation																																																							.
Template Sequence		M	W	I	T	Q	E	I	T	P	Y	L	R	K	E	Y	T	I	E	A	K	L	L	D	V	R	S	E	H	N	I	L	E	I	F	K	S	K	D	F	G	E	I	A	M	L	N	R	Q	L	L	F	K	N	.	F	L	H	I	E	S	E	L	L	A	H	M	G	G	C	T	K	K	E	L	K	E	V	L	I	V
Template Known Secondary structure										T	T								S									S	S									T	T	T							T	T					G	G	.	G	T													T	T	S	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	G	D	G	A	M	L	R	E	V	T	R	H	K	N	V	E	S	I	T	M	V	E	I	D	A	G	V	V	S	F	C	R	Q	Y	L	P	N	H	N	A	G	S	Y	D	D	P	R	F	K	L	V	I	D	D	G	V	N	F	V	N	Q	T	S	Q	T	F	D	V	I	I	S	D	C	T	D	P	I	G
Query Conservation
Alig confidence																	.	.																					.	.	.	.	.																																					.	.
Template Conservation																	.	.																					.	.	.	.	.																																					.	.
Template Sequence		D	G	F	D	L	E	L	A	H	Q	L	F	K	Y	D	.	.	T	H	I	D	F	V	Q	A	D	E	K	I	L	D	S	F	I	S	F	F	.	.	.	.	.	P	H	F	H	E	V	K	N	N	K	N	F	T	H	A	K	Q	L	L	D	L	D	I	K	K	Y	D	L	I	F	C	L	Q	E	P	D	.	.
Template Known Secondary structure		S	S										T	T	S	S	.	.								S						G	G	G	T	T	T	S	.	.	.	.	.	T	T						T		T	T					S	S	G	G	G	S											S	S				.	.
Template Predicted Secondary structure																	.	.																					.	.	.	.	.																																					.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	E	S	L	F	T	S	A	F	Y	E	G	C	K	R	C	L	N	P	G	G	I	F	V	A	Q	N	G	V	C	F	L	Q	Q	E	E	A	I	D	S	H	R	K	L	S	H	Y	F	S	D	V	G	F	Y	Q	A	A	I	P	T	Y	Y	G	G	I	M	T	F	A	W	A	T	D	N	D	A	L	R	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																																								.	.															.	.
Template Conservation		.	.	.	.	.	.	.																																																								.	.															.	.
Template Sequence		.	.	.	.	.	.	.	I	H	R	I	D	G	L	K	R	M	L	K	E	D	G	V	F	I	S	V	A	K	H	P	L	L	E	H	V	S	M	Q	N	A	L	K	N	M	G	G	V	F	S	V	A	M	P	F	V	A	P	L	R	I	L	.	.	S	N	K	G	Y	I	Y	A	S	F	K	T	H	P	.	.
Template Known Secondary structure		.	.	.	.	.	.	.									T	T														T	T	T														T	T		S								T	T		T	T	.	.										S	S			T	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																								.	.															.	.
Template SS confidence
									151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	T	E	I	I	Q	A	R	F	L	A	S	G	L	K	C	R	Y	Y	N	P	A	I	H	T	A	A	F	A	L	P	Q	Y	L	Q	D	A	L	A	S	Q
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	L	K	D	L	M	T	P	K	I	E	A	L	T	S	V	R	Y	Y	N	E	D	I	H	R	A	A	F	A	L	P	K	N	L	Q	E	V	F	K	D	N
Template Known Secondary structure		.	.	T	T	T							T	T			S		S	S									T	T										G	G	G	T
Template Predicted Secondary structure		.	.
Template SS confidence
				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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