Job Description P09158 Confidence 98.38% Date Thu Jan 5 11:02:05 GMT 2012 Rank 248 Aligned Residues 147 % Identity 14% Template c1uwvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase Resolution 1.95 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		L	L	A	H	G	H	A	K	H	V	L	I	I	G	G	G	D	G	A	M	L	R	E	V	T	R	H	K	N	V	E	S	I	T	M	V	E	I	D	A	G	V	V	S	F	C	R	Q	Y	L	P	N	H	N	A	G	S	Y	D	D	P	R	F	K	L	V	I	D	D	G	V	N	F	V	N	Q	T	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																													.	.																						.	.	.	.	.																							.	.	.
Template Conservation																													.	.																						.	.	.	.	.
Template Sequence		W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	X	G	N	F	T	L	P	L	A	T	Q	.	.	A	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	.	.	.	.	.	R	L	N	G	L	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A
Template Known Secondary structure				T			T	T							S		T	T	T	T	T						T	T	.	.	S	S							S													.	.	.	.	.			T	T			S								T	T	S			S	S	S	G	G	G
Template Predicted Secondary structure																													.	.																						.	.	.	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.						.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		S	Q	T	F	D	V	I	I	S	D	C	T	D	P	I	G	P	G	E	S	L	F	T	S	A	F	Y	E	G	C	K	R	C	L	N	P	G	G	I	F	V	A	Q	N	G	V	C	F	L	Q	Q	E	E	A	I	D	S	H	R	K	L	S	H	Y	.	F	S	D	V	G	F	Y	Q	A	A	I	P	T	Y	Y
Query Conservation																																																																		.
Alig confidence																			.	.	.	.	.	.	.									.										.	.	.			.	.																.
Template Conservation																			.	.	.	.	.	.	.									.										.	.	.			.	.
Template Sequence		K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	.	.	.	.	.	.	.	G	V	X	Q	Q	I	I	K	.	L	E	P	I	R	I	V	Y	V	.	.	.	S	C	.	.	N	P	A	T	L	A	R	D	S	E	A	L	L	K	A	G	Y	T	I	A	R	L	A	X	L	D	X	F	P	H	T
Template Known Secondary structure		T	T			S								T	T				.	.	.	.	.	.	.									.				S						.	.	.		S	.	.															T	T												S	T	T	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.									.										.	.	.			.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370								.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.				.	.			390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		228	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	I	M	T	F	A	W	A	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	H	L	E	S	X	V	L	F	S	R
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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